Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life (Q36407108)

14 August 2017

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title

Evolutionary genomics of archaeal viruses: unique viral genomes in the third domain of life (English)

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14 August 2017

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3

Eugene V Koonin

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14 August 2017

David Prangishvili

1

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PubMed ID

16503363

14 August 2017

Roger A Garrett

series ordinal

2

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14 August 2017

28 February 2006

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14 August 2017

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14 August 2017

117

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14 August 2017

1

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14 August 2017

52-67

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Tailed bacteriophages: the order caudovirales

14 August 2017

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Bacteriophage observations and evolution

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

The many faces of the helix-turn-helix domain: transcription regulation and beyond

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

DNA-binding proteins and evolution of transcription regulation in the archaea

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Homologues of 26S proteasome subunits are regulators of transcription and translation

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

SNDV, a novel virus of the extremely thermophilic and acidophilic archaeon Sulfolobus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

A novel lipothrixvirus, SIFV, of the extremely thermophilic crenarchaeon Sulfolobus

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Do viruses form lineages across different domains of life?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

What does structure tell us about virus evolution?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Constituents of SH1, a novel lipid-containing virus infecting the halophilic euryarchaeon Haloarcula hispanica

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

AFV1, a novel virus infecting hyperthermophilic archaea of the genus acidianus

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Holliday junction resolving enzymes of archaeal viruses SIRV1 and SIRV2

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

DNA packaging in dsDNA bacteriophages

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

The genome of the archaeal virus SIRV1 has features in common with genomes of eukaryal viruses

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Prophages and bacterial genomics: what have we learned so far?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Comparative genomics and evolution of the tailed-bacteriophages.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Double-stranded DNA bacteriophage prohead protease is homologous to herpesvirus protease

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Evolution of a protein fold in vitro

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Haloarchaeal viruses: how diverse are they?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Archaea and the origin(s) of DNA replication proteins

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Delivery of ubiquitinated substrates to protein-unfolding machines

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Distinguishing Homologous from Analogous Proteins

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

PAV1, the first virus-like particle isolated from a hyperthermophilic euryarchaeote, "Pyrococcus abyssi".

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

ParG, a protein required for active partition of bacterial plasmids, has a dimeric ribbon-helix-helix structure

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

The structure of plasmid-encoded transcriptional repressor CopG unliganded and bound to its operator

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Viral proteins containing the purine NTP-binding sequence pattern

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

The immunity-conferring plasmid p phi HL from the Halobacterium salinarium phage phi H: nucleotide sequence and transcription

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Expression and regulation of Halobacterium halobium phage phi H genes.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Morphology and genome organization of the virus PSV of the hyperthermophilic archaeal genera Pyrobaculum and Thermoproteus: a novel virus family, the Globuloviridae.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Viral diversity in hot springs of Pozzuoli, Italy, and characterization of a unique archaeal virus, Acidianus bottle-shaped virus, from a new family, the Ampullaviridae

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Structure and genome organization of AFV2, a novel archaeal lipothrixvirus with unusual terminal and core structures

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Virology: independent virus development outside a host

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Hot new virus, deep connections

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Prokaryotic transcription regulators: more than just the helix-turn-helix motif

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Common origin of four diverse families of large eukaryotic DNA viruses

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Evolutionary genomics of nucleo-cytoplasmic large DNA viruses

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Evolutionary history and higher order classification of AAA+ ATPases

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Organization of Methanobacterium thermoautotrophicum bacteriophage psi M1 DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Halobacterium halobium strains lysogenic for phage phi H contain a protein resembling coliphage repressors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Transcription of the rod-shaped viruses SIRV1 and SIRV2 of the hyperthermophilic archaeon sulfolobus

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Structure of an archaeal virus capsid protein reveals a common ancestry to eukaryotic and bacterial viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Natrialba magadii virus phiCh1: first complete nucleotide sequence and functional organization of a virus infecting a haloalkaliphilic archaeon

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Evolution of viral DNA-dependent DNA polymerases

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Orthologs, paralogs, and evolutionary genomics

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Horizontal gene transfer in prokaryotes: quantification and classification

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

On the origin of genomes and cells within inorganic compartments

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Enzymatic synthesis of deoxy-5-methyl-cytidylic acid replacing deoxycytidylic acid in Xanthomonas oryzae phage Xp12DNA

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Lateral gene transfer: when will adolescence end?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Did DNA replication evolve twice independently?

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

SMART 4.0: towards genomic data integration

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

The genome of archaeal prophage PsiM100 encodes the lytic enzyme responsible for autolysis of Methanothermobacter wolfeii

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

CD-Search: protein domain annotations on the fly

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Glycosyltransferases encoded by viruses

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

7 January 2021

Bacteriophage T4 Genome

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

The structure and evolution of the major capsid protein of a large, lipid-containing DNA virus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Identification and characterization of the genes encoding three structural proteins of the Thermoproteus tenax virus TTV1.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

HF1 and HF2: novel bacteriophages of halophilic archaea

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Complete nucleotide sequence of the virus SSV1 of the archaebacterium Sulfolobus shibatae

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Bacteriophages of Halobacterium halobium: isolated from fermented fish sauce and primary characterization.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Origins of highly mosaic mycobacteriophage genomes

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Sequences and replication of genomes of the archaeal rudiviruses SIRV1 and SIRV2: relationships to the archaeal lipothrixvirus SIFV and some eukaryal viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Multiple variants of the archaeal DNA rudivirus SIRV1 in a single host and a novel mechanism of genomic variation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Molecular analysis of Methanobacterium phage psiM2.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

SH1: A novel, spherical halovirus isolated from an Australian hypersaline lake.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Evolutionary insights from studies on viruses of hyperthermophilic archaea

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Exceptionally diverse morphotypes and genomes of crenarchaeal hyperthermophilic viruses

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Viruses of hyperthermophilic Crenarchaea

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Viruses of the extremely thermophilic archaeon Sulfolobus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Remarkable morphological diversity of viruses and virus-like particles in hot terrestrial environments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

The 1.2-megabase genome sequence of Mimivirus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

DNA recognition by beta-sheets in the Arc repressor-operator crystal structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Putative promoter elements for the ribosomal RNA genes of the thermoacidophilic archaebacterium Sulfolobus sp. strain B12.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Viruses from extreme thermal environments

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

The structure of a thermophilic archaeal virus shows a double-stranded DNA viral capsid type that spans all domains of life

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Bacteriophages of Halobacterium halobium: virion DNAs and proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

7 January 2021

Global phage diversity

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Inversion within the haloalkaliphilic virus phi Ch1 DNA results in differential expression of structural proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

The particle SSV1 from the extremely thermophilic archaeon Sulfolobus is a virus: demonstration of infectivity and of transfection with viral DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Halobacterium halobium phage øH.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

A workbench for multiple alignment construction and analysis

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Viruses of hyperthermophilic Archaea

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Crystal structure of the met repressor-operator complex at 2.8 A resolution reveals DNA recognition by beta-strands

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Relationships between fuselloviruses infecting the extremely thermophilic archaeon Sulfolobus: SSV1 and SSV2.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Genes for DNA cytosine methyltransferases and structural proteins, expressed during lytic growth by the phage phi H of the archaebacterium Halobacterium salinarium

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Antisense RNA mediates transcriptional processing in an archaebacterium, indicating a novel kind of RNase activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Transcription of the halophage phi H repressor gene is abolished by transcription from an inversely oriented lytic promoter

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

DNA recognition by a beta-sheet

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Haloviruses HF1 and HF2: evidence for a recent and large recombination event

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

HF2: a double-stranded DNA tailed haloarchaeal virus with a mosaic genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Bacteriophage of Halobacterium salinarium

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

A novel rudivirus, ARV1, of the hyperthermophilic archaeal genus Acidianus

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Isolation of a halobacterial phage with a fully cytosine-methylated genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Salt-dependent bacteriophage infecting Halobacterium cutirubrum and H. halobium

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Comparative genomic analysis of hyperthermophilic archaeal Fuselloviridae viruses

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Characterization of Natronobacterium magadii phage ΦCh1, a unique archaeal phage containing DNA and RNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Isolation and characterization of an archaebacterial viruslike particle from Methanococcus voltae A3

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Sulfolobus tengchongensis spindle-shaped virus STSV1: virus-host interactions and genomic features

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

Ecophysiology of Bacteriophage S5100 Infecting Halobacterium cutirubrum

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

7 January 2021

Replication and resolution of cloned poxvirus telomeres in vivo generates linear minichromosomes with intact viral hairpin termini.

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

7 January 2021

Halophage HF2: genome organization and replication strategy.

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

7 January 2021

Screening for Sulfolobales, their Plasmids and their Viruses in Icelandic Solfataras

1 reference

https://api.crossref.org/works/10.1016%2FJ.VIRUSRES.2006.01.007

7 January 2021

10.1016/J.VIRUSRES.2006.01.007

Identifiers

DOI

1 reference

14 August 2017

1 reference

PubMed ID

16503363