Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1. (Q36414986)

14 August 2017

Regulation of mRNA Levels by Decay-Promoting Introns that Recruit the Exosome Specificity Factor Mmi1. (English)

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14 August 2017

1

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9 June 2020

Sina Wittmann

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9 June 2020

Sneha Shah

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9 June 2020

Sander Granneman

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9 June 2020

Lidia Vasiljeva

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9 June 2020

author name string

Monica Passoni

3

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9 June 2020

language of work or name

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6 December 2015

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14 August 2017

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9 June 2020

volume

13

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9 June 2020

issue

11

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9 June 2020

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2504-2515

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describes a project that uses

9 June 2020

DESeq2

object named as

DESeq2

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

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cites work

The fission yeast MTREC complex targets CUTs and unspliced pre-mRNAs to the nuclear exosome.

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Regulated Intron Retention and Nuclear Pre-mRNA Decay Contribute to PABPN1 Autoregulation

30 September 2017

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Poly(A) Polymerase and the Nuclear Poly(A) Binding Protein, PABPN1, Coordinate the Splicing and Degradation of a Subset of Human Pre-mRNAs.

30 September 2017

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Transcriptome wide annotation of eukaryotic RNase III reactivity and degradation signals

30 September 2017

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Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

30 September 2017

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Long non-coding RNA-mediated transcriptional interference of a permease gene confers drug tolerance in fission yeast.

30 September 2017

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Widespread intron retention in mammals functionally tunes transcriptomes

30 September 2017

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Stress-induced nuclear RNA degradation pathways regulate yeast bromodomain factor 2 to promote cell survival

30 September 2017

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Regulation of glucose-dependent gene expression by the RNA helicase Dbp2 in Saccharomyces cerevisiae.

30 September 2017

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Contributions of transcription and mRNA decay to gene expression dynamics of fission yeast in response to oxidative stress

30 September 2017

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Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex

30 September 2017

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lncRNA recruits RNAi and the exosome to dynamically regulate pho1 expression in response to phosphate levels in fission yeast.

30 September 2017

1 reference

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PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast

30 September 2017

1 reference

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N6-methyladenosine-dependent regulation of messenger RNA stability

30 September 2017

1 reference

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Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance.

30 September 2017

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Nuclear RNA surveillance: role of TRAMP in controlling exosome specificity

30 September 2017

1 reference

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RNA decay machines: the exosome

30 September 2017

1 reference

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Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Extensive degradation of RNA precursors by the exosome in wild-type cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Rrp6p controls mRNA poly(A) tail length and its decoration with poly(A) binding proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Hexanucleotide motifs mediate recruitment of the RNA elimination machinery to silent meiotic genes.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Mmi1 RNA surveillance machinery directs RNAi complex RITS to specific meiotic genes in fission yeast

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Diverse forms of RPS9 splicing are part of an evolving autoregulatory circuit

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Tri-snRNP-associated proteins interact with subunits of the TRAMP and nuclear exosome complexes, linking RNA decay and pre-mRNA splicing

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

The fission yeast RNA binding protein Mmi1 regulates meiotic genes by controlling intron specific splicing and polyadenylation coupled RNA turnover

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Diverse environmental stresses elicit distinct responses at the level of pre-mRNA processing in yeast

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Red1 promotes the elimination of meiosis-specific mRNAs in vegetatively growing fission yeast

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Importance of polyadenylation in the selective elimination of meiotic mRNAs in growing S. pombe cells.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

L30 binds the nascent RPL30 transcript to repress U2 snRNP recruitment

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Rapid, transcript-specific changes in splicing in response to environmental stress

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Human ribosomal protein S13 regulates expression of its own gene at the splicing step by a feedback mechanism

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Selective elimination of messenger RNA prevents an incidence of untimely meiosis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Nrd1 interacts with the nuclear exosome for 3' processing of RNA polymerase II transcripts

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

The odyssey of a regulated transcript.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Identification of a regulated pathway for nuclear pre-mRNA turnover.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Ribosomal protein S14 of Saccharomyces cerevisiae regulates its expression by binding to RPS14B pre-mRNA and to 18S rRNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Ribosomal protein L32 of Saccharomyces cerevisiae influences both the splicing of its own transcript and the processing of rRNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Autoregulation of expression of the yeast Dbp2p 'DEAD-box' protein is mediated by sequences in the conserved DBP2 intron

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Molecular genetic analysis of fission yeast Schizosaccharomyces pombe

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

p68 RNA helicase: identification of a nucleolar form and cloning of related genes containing a conserved intron in yeasts

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Spliceosome-mediated decay (SMD) regulates expression of nonintronic genes in budding yeast.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Regulation of axon guidance by compartmentalized nonsense-mediated mRNA decay

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

An evolutionarily conserved, alternatively spliced, intron in the p68/DDX5 DEAD-box RNA helicase gene encodes a novel miRNA.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Negative regulation of meiotic gene expression by the nuclear poly(a)-binding protein in fission yeast.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

A complex gene regulatory mechanism that operates at the nexus of multiple RNA processing decisions

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Orchestrated intron retention regulates normal granulocyte differentiation.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Transcription-induced chromatin association of RNA surveillance factors mediates facultative heterochromatin formation in fission yeast.

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Transcriptome-wide analysis of exosome targets

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

RNAse III-mediated degradation of unspliced pre-mRNAs and lariat introns

21 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4695336

Clr4/Suv39 and RNA quality control factors cooperate to trigger RNAi and suppress antisense RNA.

21 September 2018

1 reference

12 December 2020

RNAi-dependent and -independent RNA turnover mechanisms contribute to heterochromatic gene silencing

1 reference

12 December 2020

A Pre-mRNA degradation pathway that selectively targets intron-containing genes requires the nuclear poly(A)-binding protein

1 reference

12 December 2020

Introns within ribosomal protein genes regulate the production and function of yeast ribosomes

1 reference

12 December 2020

RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation

1 reference

12 December 2020

10.1016/J.CELREP.2015.11.026

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26670050%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26670050%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

PubMed publication ID

26670050

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26670050%20AND%20SRC:MED&resulttype=core&format=json