The 3' processing factor CstF functions in the DNA repair response (Q36580663)

15 August 2017

The 3' processing factor CstF functions in the DNA repair response (English)

1 reference

15 August 2017

Nurit Mirkin

1

1 reference

15 August 2017

Danae Fonseca

2

1 reference

15 August 2017

Samia Mohammed

3

1 reference

15 August 2017

Murat A Cevher

4

1 reference

15 August 2017

James L Manley

5

1 reference

15 August 2017

Frida E Kleiman

6

1 reference

15 August 2017

language of work or name

English

0 references

publication date

5 February 2008

1 reference

15 August 2017

Nucleic Acids Research

1 reference

15 August 2017

36

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15 August 2017

6

1 reference

15 August 2017

1792-1804

1 reference

describes a project that uses

15 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2330234/fullTextXML

inferred from PubMed Central ID database lookup

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CPD damage recognition by transcribing RNA polymerase II

9 September 2017

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Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance

9 September 2017

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Cockayne syndrome A and B proteins differentially regulate recruitment of chromatin remodeling and repair factors to stalled RNA polymerase II in vivo

9 September 2017

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When transcription and repair meet: a complex system

9 September 2017

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CSA-dependent degradation of CSB by the ubiquitin-proteasome pathway establishes a link between complementation factors of the Cockayne syndrome

9 September 2017

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DNA damage-induced BARD1 phosphorylation is critical for the inhibition of messenger RNA processing by BRCA1/BARD1 complex

9 September 2017

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What's Ub chain linkage got to do with it?

9 September 2017

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Structural insight into poly(A) binding and catalytic mechanism of human PARN.

9 September 2017

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Transcription inhibition: a potential strategy for cancer therapeutics

9 September 2017

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RNA turnover: unexpected consequences of being tailed

9 September 2017

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Ubiquitin-binding domains

9 September 2017

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Delivery of ubiquitinated substrates to protein-unfolding machines

9 September 2017

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Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition

9 September 2017

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Cryptic pol II transcripts are degraded by a nuclear quality control pathway involving a new poly(A) polymerase

9 September 2017

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BRCA1/BARD1 inhibition of mRNA 3' processing involves targeted degradation of RNA polymerase II.

9 September 2017

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The transcriptional coactivator PC4/Sub1 has multiple functions in RNA polymerase II transcription.

9 September 2017

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The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.

9 September 2017

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The single-strand DNA binding activity of human PC4 prevents mutagenesis and killing by oxidative DNA damage

9 September 2017

1 reference

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Nonsense-mediated mRNA decay: splicing, translation and mRNP dynamics

9 September 2017

1 reference

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Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities

9 September 2017

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Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression

9 September 2017

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How the ubiquitin-proteasome system controls transcription

9 September 2017

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On the importance of being co-transcriptional

9 September 2017

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When machines get stuck--obstructed RNA polymerase II: displacement, degradation or suicide

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Transcription-coupled and DNA damage-dependent ubiquitination of RNA polymerase II in vitro

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

A Rad26-Def1 complex coordinates repair and RNA pol II proteolysis in response to DNA damage

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Mechanisms of transcription-coupled DNA repair

9 September 2017

1 reference

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Evolutionarily conserved interaction between CstF-64 and PC4 links transcription, polyadenylation, and termination

9 September 2017

1 reference

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The cap-to-tail guide to mRNA turnover

9 September 2017

1 reference

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The BARD1-CstF-50 interaction links mRNA 3' end formation to DNA damage and tumor suppression

9 September 2017

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UV light-induced degradation of RNA polymerase II is dependent on the Cockayne's syndrome A and B proteins but not p53 or MLH1.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Human pre-mRNA cleavage factor II(m) contains homologs of yeast proteins and bridges two other cleavage factors

9 September 2017

1 reference

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Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

9 September 2017

1 reference

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Dynamic association of capping enzymes with transcribing RNA polymerase II

9 September 2017

1 reference

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The ends of the affair: capping and polyadenylation.

9 September 2017

1 reference

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The Mre11 complex and ATM: collaborating to navigate S phase

9 September 2017

1 reference

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BASC, a super complex of BRCA1-associated proteins involved in the recognition and repair of aberrant DNA structures

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Analysis of promoter binding by the E2F and pRB families in vivo: distinct E2F proteins mediate activation and repression

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

mRNA stability in eukaryotes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Functional interaction of BRCA1-associated BARD1 with polyadenylation factor CstF-50

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Ubiquitination of RNA polymerase II large subunit signaled by phosphorylation of carboxyl-terminal domain

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Levels of polyadenylation factor CstF-64 control IgM heavy chain mRNA accumulation and other events associated with B cell differentiation

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Efficient PCNA complex formation is dependent upon both transcription coupled repair and genome overall repair

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

RNA polymerase II is an essential mRNA polyadenylation factor

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Mechanism and regulation of mRNA polyadenylation

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Dynamic changes of BRCA1 subnuclear location and phosphorylation state are initiated by DNA damage

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

The C-terminal domain of RNA polymerase II couples mRNA processing to transcription

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

UV-induced ubiquitination of RNA polymerase II: a novel modification deficient in Cockayne syndrome cells

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Selective removal of transcription-blocking DNA damage from the transcribed strand of the mammalian DHFR gene

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Effects of UV, 4-NQO and TPA on gene expression in cultured human epidermal keratinocytes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

In vivo assays for transcription-coupled repair.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

A nuclear surveillance pathway for mRNAs with defective polyadenylation.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

BRCA1/BARD1 ubiquitinate phosphorylated RNA polymerase II.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Removal of UV photoproducts from an adenovirus-encoded reporter gene following infection of unirradiated and UV-irradiated human fibroblasts

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Core promoter elements and TAFs contribute to the diversity of transcriptional activation in vertebrates

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Ultraviolet radiation alters the phosphorylation of RNA polymerase II large subunit and accelerates its proteasome-dependent degradation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Expression and nucleotide excision repair of a UV-irradiated reporter gene in unirradiated human cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Ultraviolet radiation-induced ubiquitination and proteasomal degradation of the large subunit of RNA polymerase II. Implications for transcription-coupled DNA repair

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Targeted disruption of an essential vertebrate gene: ASF/SF2 is required for cell viability

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Transcription-coupled repair and human disease

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Preferential and strand-specific DNA repair of (6-4) photoproducts detected by a photochemical method in the hamster DHFR gene.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Validation of housekeeping genes for normalizing RNA expression in real-time PCR.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Behavior of T7 RNA polymerase and mammalian RNA polymerase II at site-specific cisplatin adducts in the template DNA.

20 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2330234

Efficient synthesis of 32P-labeled single-stranded DNA probes using linear PCR; application of the method for analysis of strand-specific DNA repair

20 September 2018

1 reference

12 December 2020

A frequent TG deletion near the polyadenylation signal of the human HEXB gene: occurrence of an irregular DNA structure and conserved nucleotide sequence motif in the 3' untranslated region

1 reference

12 December 2020

Transcription response and nucleotide excision repair

1 reference

12 December 2020

Inhibition of RNA polymerase II as a trigger for the p53 response

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKN005

1 reference

15 August 2017

1 reference

15 August 2017

PubMed publication ID

18252771

1 reference