Visualizing transient low-populated structures of RNA. (Q36664250)

15 August 2017

Visualizing transient low-populated structures of RNA. (English)

1 reference

15 August 2017

1 reference

Jeetender Chugh

3

0 references

Katja Petzold

object named as

Katja Petzold

2

0 references

author name string

Elizabeth A Dethoff

1

1 reference

15 August 2017

Anette Casiano-Negroni

4

1 reference

15 August 2017

Hashim M Al-Hashimi

5

1 reference

15 August 2017

language of work or name

English

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publication date

7 October 2012

1 reference

15 August 2017

1 reference

15 August 2017

491

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15 August 2017

7426

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15 August 2017

724-728

1 reference

Structure of an intermediate state in protein folding and aggregation

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Functional complexity and regulation through RNA dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Prospects for riboswitch discovery and analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Measurement of protein unfolding/refolding kinetics and structural characterization of hidden intermediates by NMR relaxation dispersion

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

A transient and low-populated protein-folding intermediate at atomic resolution

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

High-resolution NMR structure of an RNA model system: the 14-mer cUUCGg tetraloop hairpin RNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

What recent ribosome structures have revealed about the mechanism of translation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

HIV-1 RNA dimerization: It takes two to tango

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Molecular dynamics study of the ribosomal A-site.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Characterizing complex dynamics in the transactivation response element apical loop and motional correlations with the bulge by NMR, molecular dynamics, and mutagenesis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Dynamic personalities of proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Mechanism of coupled folding and binding of an intrinsically disordered protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Understanding the isomerization of the HIV-1 dimerization initiation domain by the nucleocapsid protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Nucleocapsid protein-mediated maturation of dimer initiation complex of full-length SL1 stemloop of HIV-1: sequence effects and mechanism of RNA refolding

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

A suite of Mathematica notebooks for the analysis of protein main chain 15N NMR relaxation data

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

The dynamic energy landscape of dihydrofolate reductase catalysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Characterization of the dynamics of biomacromolecules using rotating-frame spin relaxation NMR spectroscopy

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Off-resonance R(1rho) NMR studies of exchange dynamics in proteins with low spin-lock fields: an application to a Fyn SH3 domain

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

HIV-1 TAR RNA: the target of molecular interactions between the virus and its host

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

The apical loop of the HIV-1 TAR RNA hairpin is stabilized by a cross-loop base pair

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Stem of SL1 RNA in HIV-1: Structure and Nucleocapsid Protein Binding for a 1 × 3 Internal Loop,

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Structure of the intact stem and bulge of HIV-1 Psi-RNA stem-loop SL1

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Mechanism of nucleocapsid protein catalyzed structural isomerization of the dimerization initiation site of HIV-1.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Imino proton exchange and base-pair kinetics in RNA duplexes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Recognition of the codon-anticodon helix by ribosomal RNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Paromomycin binding induces a local conformational change in the A-site of 16 S rRNA

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Mutant human immunodeficiency virus type 1 genomes with defects in RNA dimerization or encapsidation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Decoding fidelity at the ribosomal A and P sites: influence of mutations in three different regions of the decoding domain in 16S rRNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Structure of the A site of Escherichia coli 16S ribosomal RNA complexed with an aminoglycoside antibiotic

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

trans activation of human immunodeficiency virus type 1 is sequence specific for both the single-stranded bulge and loop of the trans-acting-responsive hairpin: a quantitative analysis.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Transient Hoogsteen base pairs in canonical duplex DNA.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using 13C NMR spin relaxation and specific isotope labeling

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Resolving fast and slow motions in the internal loop containing stem-loop 1 of HIV-1 that are modulated by Mg2+ binding: role in the kissing-duplex structural transition

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

NMR structure of the full-length linear dimer of stem-loop-1 RNA in the HIV-1 dimer initiation site

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Dynamics and metal ion binding in the U6 RNA intramolecular stem-loop as analyzed by NMR.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

HIV-1 tat trans-activation requires the loop sequence within tar.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3590852

Measurement of methyl axis orientations in invisible, excited states of proteins by relaxation dispersion NMR spectroscopy

28 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE11498

Internal dynamics control activation and activity of the autoinhibited Vav DH domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE11498

NMR R1 rho rotating-frame relaxation with weak radio frequency fields.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE11498

An NMR study of the HIV-1 TAR element hairpin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE11498

Specific HIV-1 TAR RNA loop sequence and functional groups are required for human cyclin T1-Tat-TAR ternary complex formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE11498

Monitoring molecular recognition of the ribosomal decoding site

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE11498

Interaction of translation initiation factor IF1 with the E. coli ribosomal A site.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE11498

Ribosomal intersubunit bridge B2a is involved in factor-dependent translation initiation and translational processivity

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE11498

Structural requirement for the two-step dimerization of human immunodeficiency virus type 1 genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE11498

Extending the Range of Microsecond-to-Millisecond Chemical Exchange Detected in Labeled and Unlabeled Nucleic Acids by Selective Carbon R1ρNMR Spectroscopy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE11498

13C-Detection in RNA Bases: Revealing Structure−Chemical Shift Relationships

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23041928

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Increasing the exchange time-scale that can be probed by CPMG relaxation dispersion NMR

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23041928

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Active site dynamics in the lead-dependent ribozyme

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23041928

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NATURE11498

1 reference

Dimensions Publication ID

15 August 2017

0 references

1 reference

15 August 2017

PubMed publication ID

23041928

1 reference