CrossSearch, a user-friendly search engine for detecting chemically cross-linked peptides in conjugated proteins. (Q36684998)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18281724%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

title

CrossSearch, a user-friendly search engine for detecting chemically cross-linked peptides in conjugated proteins (English)

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2 January 2020

2

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2 January 2020

author name string

Owen W Nadeau

1

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2 January 2020

Justin E Paschall

3

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2 January 2020

Antonio Artigues

4

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2 January 2020

Jessica Sage

5

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2 January 2020

Maria T Villar

6

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2 January 2020

Gerald M Carlson

7

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2 January 2020

publication date

16 February 2008

1 reference

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Molecular & Cellular Proteomics

2 January 2020

published in

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2 January 2020

volume

7

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2 January 2020

issue

4

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2 January 2020

page(s)

739-749

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

2 January 2020

cites work

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Protein cross-linking analysis using mass spectrometry, isotope-coded cross-linkers, and integrated computational data processing

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Dynamic range of mass accuracy in LTQ Orbitrap hybrid mass spectrometer

30 September 2017

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Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions.

30 September 2017

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Computer-assisted mass spectrometric analysis of naturally occurring and artificially introduced cross-links in proteins and protein complexes.

30 September 2017

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Mapping protein interfaces by a trifunctional cross-linker combined with MALDI-TOF and ESI-FTICR mass spectrometry

30 September 2017

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The use of a hybrid linear trap/FT-ICR mass spectrometer for on-line high resolution/high mass accuracy bottom-up sequencing.

30 September 2017

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Comprehensive analysis of a multidimensional liquid chromatography mass spectrometry dataset acquired on a quadrupole selecting, quadrupole collision cell, time-of-flight mass spectrometer: II. New developments in Protein Prospector allow for reliab

30 September 2017

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Isotopically coded cleavable cross-linker for studying protein-protein interaction and protein complexes

30 September 2017

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Isotopically labeled crosslinking reagents: resolution of mass degeneracy in the identification of crosslinked peptides.

30 September 2017

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MS2Assign, automated assignment and nomenclature of tandem mass spectra of chemically crosslinked peptides.

30 September 2017

1 reference

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A new crosslinker for mass spectrometric analysis of the quaternary structure of protein complexes

30 September 2017

1 reference

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High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry.

30 September 2017

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Self-association of the alpha subunit of phosphorylase kinase as determined by two-hybrid screening

30 September 2017

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A novel protein cross-linking reaction in stressed Neutral Protamine Hagedorn formulations of insulin

30 September 2017

1 reference

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The alpha and beta subunits of phosphorylase kinase are homologous: cDNA cloning and primary structure of the beta subunit

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2401330

Evidence for the location of the allosteric activation switch in the multisubunit phosphorylase kinase complex from mass spectrometric identification of chemically crosslinked peptides.

30 September 2017

1 reference

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Precautions when determining kinetically the order of inactivation of enzymes by functionally irreversible inhibitors

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2401330

Tandem mass spectrometry acquisition approaches to enhance identification of protein-protein interactions using low-energy collision-induced dissociative chemical crosslinking reagents

28 June 2018

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Shotgun cross-linking analysis for studying quaternary and tertiary protein structures

5 September 2018

1 reference

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Collisionally activated dissociation and electron capture dissociation of several mass spectrometry-identifiable chemical cross-linkers.

5 September 2018

1 reference

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Collision-induced dissociative chemical cross-linking reagents and methodology: Applications to protein structural characterization using tandem mass spectrometry analysis

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2401330

Isotope-coded and affinity-tagged cross-linking (ICATXL): an efficient strategy to probe protein interaction surfaces

5 September 2018

1 reference

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Unambiguous assignment of intramolecular chemical cross-links in modified mammalian membrane proteins by Fourier transform-tandem mass spectrometry.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2401330

Global differential non-gel proteomics by quantitative and stable labeling of tryptic peptides with oxygen-18.

5 September 2018

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Mass spectrometric detection of affinity purified crosslinked peptides.

5 September 2018

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Unexpected products from the reaction of the synthetic cross-linker 3,3'-dithiobis(sulfosuccinimidyl propionate), DTSSP with peptides

5 September 2018

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Proteolytic 18O labeling for comparative proteomics: evaluation of endoprotease Glu-C as the catalytic agent

5 September 2018

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Triosidines: novel Maillard reaction products and cross-links from the reaction of triose sugars with lysine and arginine residues

5 September 2018

1 reference

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Structural Analysis of Multiprotein Complexes by Cross-linking, Mass Spectrometry, and Database Searching

5 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1074%2FMCP.M800020-MCP200

Characterization of an Antagonist Interleukin-6 Dimer by Stable Isotope Labeling, Cross-linking, and Mass Spectrometry

21 January 2018

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Crossref

https://api.crossref.org/works/10.1074%2FMCP.M800020-MCP200

An epitope proximal to the carboxyl terminus of the alpha-subunit is located near the lobe tips of the phosphorylase kinase hexadecamer

21 January 2018

1 reference

12 December 2020

Proximal regions of the catalytic gamma and regulatory beta subunits on the interior lobe face of phosphorylase kinase are structurally coupled to each other and with enzyme activation

1 reference

12 December 2020

Synergistic activation by Ca2+ and Mg2+ as the primary cause for hysteresis in the phosphorylase kinase reactions

1 reference

12 December 2020

Activated states of phosphorylase kinase as detected by the chemical cross-linker 1,5-difluoro-2,4-dinitrobenzene

1 reference

12 December 2020

Differential affinity cross-linking of phosphorylase kinase conformers by the geometric isomers of phenylenedimaleimide

1 reference

12 December 2020

SearchXLinks. A program for the identification of disulfide bonds in proteins from mass spectra

1 reference

12 December 2020

The structural effects of endogenous and exogenous Ca2+/calmodulin on phosphorylase kinase

1 reference

12 December 2020

Mass spectrometry identifiable cross-linking strategy for studying protein-protein interactions

1 reference

12 December 2020

Pro-CrossLink. Software tool for protein cross-linking and mass spectrometry

1 reference

12 December 2020

10.1074/MCP.M800020-MCP200

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18281724%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18281724%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

PubMed publication ID

18281724

1 reference