Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice (Q36731290)

15 August 2017

Development and evaluation of a high-throughput, low-cost genotyping platform based on oligonucleotide microarrays in rice (English)

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15 August 2017

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Jeremy D Edwards

1

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15 August 2017

Jaroslav Janda

2

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15 August 2017

Megan T Sweeney

3

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15 August 2017

Ambika B Gaikwad

4

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15 August 2017

Bin Liu

5

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15 August 2017

Hei Leung

6

1 reference

15 August 2017

David W Galbraith

7

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15 August 2017

29 May 2008

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15 August 2017

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15 August 2017

4

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15 August 2017

13

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describes a project that uses

15 August 2017

limma

object named as

Limma

2 references

22 June 2022

https://europepmc.org/article/PMC/2435114

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

MUMmer

object named as

MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

exact match

https://scigraph.springernature.com/pub.10.1186/1746-4811-4-13

0 references

cites work

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Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

30 September 2017

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A mixed-model approach to association mapping using pedigree information with an illustration of resistance to Phytophthora infestans in potato

30 September 2017

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Uneven chromosome contraction and expansion in the maize genome.

30 September 2017

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Linear models and empirical bayes methods for assessing differential expression in microarray experiments

30 September 2017

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A haplotype map of the human genome

30 September 2017

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Gene movement by Helitron transposons contributes to the haplotype variability of maize

30 September 2017

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Toward genome-wide SNP genotyping

30 September 2017

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Rapid array mapping of circadian clock and developmental mutations in Arabidopsis.

30 September 2017

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30 September 2017

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30 September 2017

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Genetic structure and diversity in Oryza sativa L

30 September 2017

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Bioconductor: open software development for computational biology and bioinformatics

30 September 2017

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Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression

30 September 2017

1 reference

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Diversity Arrays Technology (DArT) for whole-genome profiling of barley

30 September 2017

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Versatile and open software for comparing large genomes

30 September 2017

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The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants

30 September 2017

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Normalization of cDNA microarray data

30 September 2017

1 reference

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DNA markers in plant improvement: an overview

30 September 2017

1 reference

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Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Productivity improvements in rice

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Spotted long oligonucleotide arrays for human gene expression analysis.

30 September 2017

1 reference

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Large-scale identification of single-feature polymorphisms in complex genomes

30 September 2017

1 reference

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Rapid mapping of zebrafish mutations with SNPs and oligonucleotide microarrays

30 September 2017

1 reference

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Human genome sequence variation and the influence of gene history, mutation and recombination

30 September 2017

1 reference

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Intraspecific violation of genetic colinearity and its implications in maize

30 September 2017

1 reference

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Fast algorithms for large-scale genome alignment and comparison

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica)

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Structure of linkage disequilibrium and phenotypic associations in the maize genome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Diversity arrays: a solid state technology for sequence information independent genotyping

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Alignment of whole genomes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

TreeView: an application to display phylogenetic trees on personal computers

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Quantitative monitoring of gene expression patterns with a complementary DNA microarray

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Basic local alignment search tool

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Hybridization of synthetic oligodeoxyribonucleotides to ΦX174 DNA: the effect of single base pair mismatch

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Size of donor chromosome segments around introgressed loci and reduction of linkage drag in marker-assisted backcross programs.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Direct allelic variation scanning of the yeast genome.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Seed banks and molecular maps: unlocking genetic potential from the wild

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

PowerMarker: an integrated analysis environment for genetic marker analysis

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Use of within-array replicate spots for assessing differential expression in microarray experiments.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Candidate defense genes as predictors of quantitative blast resistance in rice

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Pack-MULE transposable elements mediate gene evolution in plants

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Microarray-based analysis of gene expression in very large gene families: the cytochrome P450 gene superfamily of Arabidopsis thaliana.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Dwarf8 polymorphisms associate with variation in flowering time

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2435114

Analyzing and comparing nucleic acid sequences by hybridization to arrays of oligonucleotides: evaluation using experimental models

20 October 2018

1 reference

12 December 2020

Prospects for whole-genome linkage disequilibrium mapping of common disease genes

1 reference

12 December 2020

Genetic analysis of Indian aromatic and quality rice (Oryza sativa L.) germplasm using panels of fluorescently-labeled microsatellite markers

1 reference

12 December 2020

Advanced backcross QTL analysis: a method for the simultaneous discovery and transfer of valuable QTLs from unadapted germplasm into elite breeding lines

1 reference

12 December 2020

Genome-wide expression monitoring in Saccharomyces cerevisiae

1 reference

12 December 2020

Identifiers

DOI

10.1186/1746-4811-4-13

1 reference

Dimensions Publication ID

15 August 2017

0 references

1 reference

15 August 2017

1 reference