Alpha-Helix folding in the presence of structural constraints. (Q36775180)

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10 January 2020

title

Alpha-Helix folding in the presence of structural constraints (English)

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10 January 2020

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10 January 2020

Andrew Woolley

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10 January 2020

Peter Hamm

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Ellen H G Backus

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10 January 2020

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Amedeo Caflisch

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10 January 2020

1

Janne A Ihalainen

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10 January 2020

author name string

Beatrice Paoli

2

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10 January 2020

Jens Bredenbeck

5

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10 January 2020

language of work or name

English

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publication date

9 July 2008

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Proceedings of the National Academy of Sciences of the United States of America

10 January 2020

published in

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10 January 2020

volume

105

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issue

28

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10 January 2020

page(s)

9588-9593

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Folding and unfolding of a photoswitchable peptide from picoseconds to microseconds.

10 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Atom-by-atom analysis of global downhill protein folding

29 September 2017

1 reference

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Polyproline II conformation is one of many local conformational states and is not an overall conformation of unfolded peptides and proteins.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Network and graph analyses of folding free energy surfaces

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Alpha-helix formation in a photoswitchable peptide tracked from picoseconds to microseconds by time-resolved IR spectroscopy.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Hidden complexity of free energy surfaces for peptide (protein) folding

29 September 2017

1 reference

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Recent advances in helix-coil theory.

29 September 2017

1 reference

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Experimental identification of downhill protein folding.

29 September 2017

1 reference

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Helix formation via conformation diffusion search

29 September 2017

1 reference

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Continuum secondary structure captures protein flexibility

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Evaluation of a fast implicit solvent model for molecular dynamics simulations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Temperature-dependent helix-coil transition of an alanine based peptide

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Helix nucleation kinetics from molecular simulations in explicit solvent

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Site-specific conformational determination in thermal unfolding studies of helical peptides using vibrational circular dichroism with isotopic substitution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Photo-control of helix content in a short peptide

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Is cooperative oxygen binding by hemoglobin really understood?

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Deciphering rules of helix stability in peptides

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Laser temperature jump study of the helix<==>coil kinetics of an alanine peptide interpreted with a 'kinetic zipper' model

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Helix design, prediction and stability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Vibrational spectroscopy and conformation of peptides, polypeptides, and proteins

29 September 2017

2 references

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29 September 2017

https://api.crossref.org/works/10.1073%2FPNAS.0712099105

Unusually stable helix formation in short alanine-based peptides

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Photoinduced conformational dynamics of a photoswitchable peptide: a nonequilibrium molecular dynamics simulation study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Parameters of helix-coil transition theory for alanine-based peptides of varying chain lengths in water

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Wordom: a program for efficient analysis of molecular dynamics simulations.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Criteria for downhill protein folding: calorimetry, chevron plot, kinetic relaxation, and single-molecule radius of gyration in chain models with subdued degrees of cooperativity.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Folding of ubiquitin: a simple model describes the strange kinetics.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Breaking non-native hydrophobic clusters is the rate-limiting step in the folding of an alanine-based peptide

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Helix-coil transitions re-visited

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2474473

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

5 September 2018

1 reference

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CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

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Replica-exchange molecular dynamics method for protein folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712099105

Folding at the speed limit

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0712099105

The protein folding network

21 January 2018

1 reference

12 December 2020

The effects of individual amino acids on the fast folding dynamics of alpha-helical peptides

1 reference

12 December 2020

Residue Specific Resolution of Protein Folding Dynamics Using Isotope-Edited Infrared Temperature Jump Spectroscopy†

1 reference

12 December 2020

Kinetic analysis of molecular dynamics simulations reveals changes in the denatured state and switch of folding pathways upon single-point mutation of a beta-sheet miniprotein

1 reference

12 December 2020

Polymer principles of protein calorimetric two-state cooperativity

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0712099105

1 reference

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10 January 2020

0 references

1 reference

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10 January 2020

PubMed publication ID

18621686

1 reference