Quantitative residue-level structure-evolution relationships in the yeast membrane proteome (Q36810542)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23512408%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

title

Quantitative residue-level structure-evolution relationships in the yeast membrane proteome (English)

1 reference

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26 February 2020

3

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26 February 2020

1

Eric A Franzosa

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26 February 2020

author name string

Ran Xue

series ordinal

2

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26 February 2020

publication date

1 January 2013

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Genome Biology and Evolution

26 February 2020

published in

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26 February 2020

volume

5

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26 February 2020

issue

4

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26 February 2020

page(s)

734-744

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Independent effects of protein core size and expression on residue-level structure-evolution relationships

26 February 2020

cites work

1 reference

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Interaction landscape of membrane-protein complexes in Saccharomyces cerevisiae

29 September 2017

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Three-dimensional structures of membrane proteins from genomic sequencing

29 September 2017

1 reference

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The relationship between relative solvent accessibility and evolutionary rate in protein evolution

29 September 2017

1 reference

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Lipid-binding surfaces of membrane proteins: evidence from evolutionary and structural analysis

29 September 2017

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A structural dissection of amino acid substitutions in helical transmembrane proteins

29 September 2017

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MPRAP: an accessibility predictor for a-helical transmembrane proteins that performs well inside and outside the membrane

29 September 2017

1 reference

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Structural imperatives impose diverse evolutionary constraints on helical membrane proteins

29 September 2017

1 reference

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Structural determinants of the rate of protein evolution in yeast.

29 September 2017

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Solving the membrane protein folding problem

29 September 2017

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Large-scale identification of yeast integral membrane protein interactions

29 September 2017

1 reference

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Computational analysis of membrane proteins: genomic occurrence, structure prediction and helix interactions

29 September 2017

1 reference

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Computational analysis of alpha-helical membrane protein structure: implications for the prediction of 3D structural models.

29 September 2017

1 reference

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MPtopo: A database of membrane protein topology

29 September 2017

1 reference

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Helical membrane protein folding, stability, and evolution

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Internal packing of helical membrane proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Solvent accessibility and purifying selection within proteins of Escherichia coli and Salmonella enterica.

29 September 2017

1 reference

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29 September 2017

The Protein Data Bank

1 reference

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Membrane protein folding and stability: physical principles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Assessing the impact of secondary structure and solvent accessibility on protein evolution.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

SGD: Saccharomyces Genome Database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

PAML: a program package for phylogenetic analysis by maximum likelihood

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Reduced surface: an efficient way to compute molecular surfaces

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

A mutation data matrix for transmembrane proteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

A simple method for displaying the hydropathic character of a protein

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

The interpretation of protein structures: Total volume, group volume distributions and packing density

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Amino acid composition and the evolutionary rates of protein-coding genes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Dominant forces in protein folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Membrane environment imposes unique selection pressures on transmembrane domains of G protein-coupled receptors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Natural history and evolutionary principles of gene duplication in fungi

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Hydrophobic organization of membrane proteins

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Environment-specific amino acid substitution tables: tertiary templates and prediction of protein folds

27 June 2018

1 reference

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Why are polar residues within the membrane core evolutionary conserved?

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Solvent exposure imparts similar selective pressures across a range of yeast proteins.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Integrated prediction of the helical membrane protein interactome in yeast.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Are membrane proteins "inside-out" proteins?

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Coils in the Membrane Core Are Conserved and Functionally Important

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3641637

Selective constraints, amino acid composition, and the rate of protein evolution

4 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23512408

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structural determinants of protein evolution are context-sensitive at the residue level

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23512408

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Systematically assessing the influence of 3-dimensional structural context on the molecular evolution of mammalian proteomes

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23512408

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVT039

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23512408%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23512408%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

PubMed publication ID

23512408

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23512408%20AND%20SRC:MED&resulttype=core&format=json