Quantifying functional group interactions that determine urea effects on nucleic acid helix formation. (Q36847510)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23510511%20AND%20SRC:MED&resulttype=core&format=json

26 February 2020

title

Quantifying functional group interactions that determine urea effects on nucleic acid helix formation (English)

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26 February 2020

11

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26 February 2020

author name string

Emily J Guinn

1

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26 February 2020

Jeffrey J Schwinefus

2

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26 February 2020

Hyo Keun Cha

3

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26 February 2020

Joseph L McDevitt

4

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26 February 2020

Wolf E Merker

5

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26 February 2020

Ryan Ritzer

6

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26 February 2020

Gregory W Muth

7

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26 February 2020

Samuel W Engelsgjerd

8

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26 February 2020

Kathryn E Mangold

9

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26 February 2020

Perry J Thompson

10

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26 February 2020

M Thomas Record

12

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26 February 2020

language of work or name

English

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publication date

3 April 2013

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Journal of the American Chemical Society

26 February 2020

published in

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26 February 2020

volume

135

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26 February 2020

issue

15

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26 February 2020

page(s)

5828-5838

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Denaturation of RNA secondary and tertiary structure by urea: simple unfolded state models and free energy parameters account for measured m-values

26 February 2020

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Quantifying why urea is a protein denaturant, whereas glycine betaine is a protein stabilizer

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29 September 2017

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29 September 2017

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Urea destabilizes RNA by forming stacking interactions and multiple hydrogen bonds with nucleic acid bases

29 September 2017

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Interactions of the osmolyte glycine betaine with molecular surfaces in water: thermodynamics, structural interpretation, and prediction of m-values.

29 September 2017

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Urea, but not guanidinium, destabilizes proteins by forming hydrogen bonds to the peptide group.

29 September 2017

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Late steps in the formation of E. coli RNA polymerase-lambda P R promoter open complexes: characterization of conformational changes by rapid [perturbant] upshift experiments

29 September 2017

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Hydrophobicity of Long Chain n-Alkyl Carboxylic Acids, as Measured by Their Distribution Between Heptane and Aqueous Solutions

29 September 2017

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Towards understanding the catalytic core structure of the spliceosome

29 September 2017

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Thermal and urea-induced unfolding of the marginally stable lac repressor DNA-binding domain: a model system for analysis of solute effects on protein processes

29 September 2017

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Thermodynamics of interactions of urea and guanidinium salts with protein surface: relationship between solute effects on protein processes and changes in water-accessible surface area

29 September 2017

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Cation-pi bonding and amino-aromatic interactions in the biomolecular recognition of substituted ammonium ligands

29 September 2017

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Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

29 September 2017

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Areas, volumes, packing and protein structure

29 September 2017

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Introductory lecture: interpreting and predicting Hofmeister salt ion and solute effects on biopolymer and model processes using the solute partitioning model

29 September 2017

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Key roles of the downstream mobile jaw of Escherichia coli RNA polymerase in transcription initiation.

27 June 2018

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Probing DNA binding, DNA opening, and assembly of a downstream clamp/jaw in Escherichia coli RNA polymerase-lambdaP(R) promoter complexes using salt and the physiological anion glutamate

27 June 2018

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27 June 2018

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27 June 2018

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Use of urea and glycine betaine to quantify coupled folding and probe the burial of DNA phosphates in lac repressor-lac operator binding

27 June 2018

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27 June 2018

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27 June 2018

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Investigating the hydrogen-bonding model of urea denaturation.

27 June 2018

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5 September 2018

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5 September 2018

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5 September 2018

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Trimethylamine N-oxide stabilizes RNA tertiary structure and attenuates the denaturating effects of urea

5 September 2018

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5 September 2018

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Human telomerase RNA pseudoknot and hairpin thermal stability with glycine betaine and urea: preferential interactions with RNA secondary and tertiary structures

5 September 2018

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12 December 2020

Solution studies of the nucleic acid bases and related model compounds. Solubility in aqueous urea and amide solutions

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12 December 2020

Physical and chemical characterization of two- and three-stranded adenine-thymine and adenine-uracil homopolymer complexes

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12 December 2020

Enthalpy and heat capacity changes for formation of an oligomeric DNA duplex: interpretation in terms of coupled processes of formation and association of single-stranded helices

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12 December 2020

Applicability of urea in the thermodynamic analysis of secondary and tertiary RNA folding

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12 December 2020

Hydrophobicities of the nucleic acid bases: distribution coefficients from water to cyclohexane

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12 December 2020

Thermodynamic analysis of interactions between denaturants and protein surface exposed on unfolding: interpretation of urea and guanidinium chloride m-values and their correlation with changes in accessible surface area (ASA) using preferential inte

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12 December 2020

Sequence dependent rigidity of single stranded DNA

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12 December 2020

Folding of an mRNA pseudoknot required for stop codon readthrough: effects of mono- and divalent ions on stability

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12 December 2020

Effect of ethylene glycol, urea, and N-methylated glycines on DNA thermal stability: the role of DNA base pair composition and hydration

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Aromatic rings act as hydrogen bond acceptors

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12 December 2020

Identifiers

DOI

10.1021/JA400965N

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26 February 2020

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26 February 2020

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