Interactions of the osmolyte glycine betaine with molecular surfaces in water: thermodynamics, structural interpretation, and prediction of m-values. (Q37440942)

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English	Interactions of the osmolyte glycine betaine with molecular surfaces in water: thermodynamics, structural interpretation, and prediction of m-values.	scientific article

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7 February 2020

Interactions of the osmolyte glycine betaine with molecular surfaces in water: thermodynamics, structural interpretation, and prediction of m-values (English)

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7 February 2020

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Timothy Wendorff

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Michael W Capp

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Laurel M Pegram

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Ruth M Saecker

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Megan Kratz

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Demian Riccardi

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Jonathan G Cannon

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M Thomas Record

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1 November 2009

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10372-10379

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7 February 2020

ProtSA: a web application for calculating sequence specific protein solvent accessibilities in the unfolded ensemble.

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23 August 2017

Molecular basis of transport and regulation in the Na(+)/betaine symporter BetP

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23 August 2017

Water as a biomolecule

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Measuring the interaction of urea and protein-stabilizing osmolytes with the nonpolar surface of hydroxypropylcellulose

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Urea-amide preferential interactions in water: quantitative comparison of model compound data with biopolymer results using water accessible surface areas

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Thermodynamic characterization of the osmolyte effect on protein stability and the effect of GdnHCl on the protein denatured state

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Quantification and rationalization of the higher affinity of sodium over potassium to protein surfaces

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Predicting the energetics of osmolyte-induced protein folding/unfolding.

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Cation-pi interactions as determinants for binding of the compatible solutes glycine betaine and proline betaine by the periplasmic ligand-binding protein ProX from Escherichia coli

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Analysis of the role of OpuC, an osmolyte transport system, in salt tolerance and virulence potential of Listeria monocytogenes

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Denaturant m values and heat capacity changes: relation to changes in accessible surface areas of protein unfolding

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Betaine can eliminate the base pair composition dependence of DNA melting

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Stability of protein structure and hydrophobic interaction.

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Effects of osmolytes on RNA secondary and tertiary structure stabilities and RNA-Mg2+ interactions

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Thermodynamic origin of hofmeister ion effects

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Formation of a wrapped DNA-protein interface: experimental characterization and analysis of the large contributions of ions and water to the thermodynamics of binding IHF to H' DNA.

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Solute probes of conformational changes in open complex (RPo) formation by Escherichia coli RNA polymerase at the lambdaPR promoter: evidence for unmasking of the active site in the isomerization step and for large-scale coupled folding in the subse

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Use of urea and glycine betaine to quantify coupled folding and probe the burial of DNA phosphates in lac repressor-lac operator binding

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Increased thermal stability of proteins in the presence of naturally occurring osmolytes

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Molecular determinants for substrate specificity of the ligand-binding protein OpuAC from Bacillus subtilis for the compatible solutes glycine betaine and proline betaine

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Preferential interactions of glycine betaine and of urea with DNA: implications for DNA hydration and for effects of these solutes on DNA stability

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The exclusion of glycine betaine from anionic biopolymer surface: why glycine betaine is an effective osmoprotectant but also a compatible solute

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Application of the local-bulk partitioning and competitive binding models to interpret preferential interactions of glycine betaine and urea with protein surface

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Roles of cytoplasmic osmolytes, water, and crowding in the response of Escherichia coli to osmotic stress: biophysical basis of osmoprotection by glycine betaine

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Role of hydration in the binding of lac repressor to DNA.

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Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.

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Hofmeister salt effects on surface tension arise from partitioning of anions and cations between bulk water and the air-water interface

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Application of the transfer model to understand how naturally occurring osmolytes affect protein stability

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https://pubmed.ncbi.nlm.nih.gov/19757837

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

THE SOLUBILITY OF AMINO ACIDS AND RELATED COMPOUNDS IN AQUEOUS UREA SOLUTIONS

1 reference

https://pubmed.ncbi.nlm.nih.gov/19757837

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Thermodynamic analysis of interactions between denaturants and protein surface exposed on unfolding: interpretation of urea and guanidinium chloride m-values and their correlation with changes in accessible surface area (ASA) using preferential inte

1 reference

https://pubmed.ncbi.nlm.nih.gov/19757837

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/BI901273R

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7 February 2020

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7 February 2020

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7 February 2020

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