A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata (Q36882825)

16 August 2017

A Network of Paralogous Stress Response Transcription Factors in the Human Pathogen Candida glabrata (English)

1 reference

16 August 2017

0 references

6

1 reference

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7 June 2020

Stéphane Le Crom

7

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7 June 2020

Frederic DEVAUX

9

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7 June 2020

author name string

Jawad Merhej

1

1 reference

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7 June 2020

Antonin Thiebaut

2

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7 June 2020

Corinne Blugeon

3

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7 June 2020

Juliette Pouch

4

1 reference

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7 June 2020

Mohammed El Amine Ali Chaouche

5

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7 June 2020

Gaëlle Lelandais

8

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7 June 2020

publication date

9 May 2016

1 reference

Frontiers in Microbiology

16 August 2017

1 reference

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7 June 2020

volume

7

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7 June 2020

page(s)

645

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describes a project that uses

7 June 2020

limma

object named as

LIMMA

2 references

22 June 2022

https://europepmc.org/article/PMC/4860858

based on heuristic

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

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ChIPseq in Yeast Species: From Chromatin Immunoprecipitation to High-Throughput Sequencing and Bioinformatics Data Analyses

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Transcription factors Asg1p and Hal9p regulate pH homeostasis in Candida glabrata

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Optimization of transcription factor binding map accuracy utilizing knockout-mouse models

29 September 2017

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The basic leucine zipper stress response regulator Yap5 senses high-iron conditions by coordination of [2Fe-2S] clusters

29 September 2017

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Deteriorated stress response in stationary-phase yeast: Sir2 and Yap1 are essential for Hsf1 activation by heat shock and oxidative stress, respectively

29 September 2017

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The Janus transcription factor HapX controls fungal adaptation to both iron starvation and iron excess

29 September 2017

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bPeaks: a bioinformatics tool to detect transcription factor binding sites from ChIPseq data in yeasts and other organisms with small genomes.

29 September 2017

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The chemical nature of phenolic compounds determines their toxicity and induces distinct physiological responses in Saccharomyces cerevisiae in lignocellulose hydrolysates

29 September 2017

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Immune evasion, stress resistance, and efficient nutrient acquisition are crucial for intracellular survival of Candida glabrata within macrophages

29 September 2017

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Two residues in the basic region of the yeast transcription factor Yap8 are crucial for its DNA-binding specificity

29 September 2017

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Widespread misinterpretable ChIP-seq bias in yeast

29 September 2017

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Sorbic acid stress activates the Candida glabrata high osmolarity glycerol MAP kinase pathway.

29 September 2017

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The oxidative stress response of the opportunistic fungal pathogen Candida glabrata.

29 September 2017

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Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins

29 September 2017

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The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation in Saccharomyces cerevisiae

29 September 2017

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Evolutionary principles of modular gene regulation in yeasts

29 September 2017

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Dissection of Ire1 functions reveals stress response mechanisms uniquely evolved in Candida glabrata

29 September 2017

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Two unlike cousins: Candida albicans and C. glabrata infection strategies

29 September 2017

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STB5 is a negative regulator of azole resistance in Candida glabrata

29 September 2017

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Iron-induced dissociation of the Aft1p transcriptional regulator from target gene promoters is an initial event in iron-dependent gene suppression.

29 September 2017

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The yeast hypoxic responses, resources for new biotechnological opportunities

29 September 2017

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The role of the Yap5 transcription factor in remodeling gene expression in response to Fe bioavailability

29 September 2017

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29 September 2017

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A potent plant-derived antifungal acetylenic acid mediates its activity by interfering with fatty acid homeostasis.

29 September 2017

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A recently evolved transcriptional network controls biofilm development in Candida albicans

29 September 2017

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Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights

29 September 2017

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The Candida genome database incorporates multiple Candida species: multispecies search and analysis tools with curated gene and protein information for Candida albicans and Candida glabrata

29 September 2017

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Yap5 protein-regulated transcription of the TYW1 gene protects yeast from high iron toxicity

29 September 2017

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Genome-wide functional profiling reveals genes required for tolerance to benzene metabolites in yeast

29 September 2017

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Differential oxidant tolerance determined by the key transcription factor Yap1 is controlled by levels of the Yap1-binding protein, Ybp1

29 September 2017

1 reference

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An iron homeostasis regulatory circuit with reciprocal roles in Candida albicans commensalism and pathogenesis

29 September 2017

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The reconstruction of condition-specific transcriptional modules provides new insights in the evolution of yeast AP-1 proteins.

29 September 2017

1 reference

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The stress response factors Yap6, Cin5, Phd1, and Skn7 direct targeting of the conserved co-repressor Tup1-Ssn6 in S. cerevisiae.

29 September 2017

1 reference

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Host iron withholding demands siderophore utilization for Candida glabrata to survive macrophage killing

29 September 2017

1 reference

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Contribution of CgPDR1-regulated genes in enhanced virulence of azole-resistant Candida glabrata

29 September 2017

1 reference

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Candida albicans Hap43 is a repressor induced under low-iron conditions and is essential for iron-responsive transcriptional regulation and virulence

29 September 2017

1 reference

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HapX positively and negatively regulates the transcriptional response to iron deprivation in Cryptococcus neoformans

29 September 2017

1 reference

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Coevolution within a transcriptional network by compensatory trans and cis mutations.

29 September 2017

1 reference

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HapX-mediated adaption to iron starvation is crucial for virulence of Aspergillus fumigatus

29 September 2017

1 reference

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Evolutionary divergence in the fungal response to fluconazole revealed by soft clustering

29 September 2017

1 reference

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Evolutionary tinkering with conserved components of a transcriptional regulatory network

29 September 2017

1 reference

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Gene duplication and the evolution of ribosomal protein gene regulation in yeast

29 September 2017

1 reference

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The Yap family and its role in stress response.

29 September 2017

1 reference

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Peroxiredoxin Ahp1 acts as a receptor for alkylhydroperoxides to induce disulfide bond formation in the Cad1 transcription factor

29 September 2017

1 reference

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BEDTools: a flexible suite of utilities for comparing genomic features

29 September 2017

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Regulatory factors controlling transcription of Saccharomyces cerevisiae IXR1 by oxygen levels: a model of transcriptional adaptation from aerobiosis to hypoxia implicating ROX1 and IXR1 cross-regulation.

29 September 2017

1 reference

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Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture

29 September 2017

1 reference

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Dynamic and complex transcription factor binding during an inducible response in yeast

29 September 2017

1 reference

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Identification of the Candida albicans Cap1p regulon.

29 September 2017

1 reference

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Identifying gene regulatory modules of heat shock response in yeast

29 September 2017

1 reference

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Structure and properties of transcriptional networks driving selenite stress response in yeasts

29 September 2017

1 reference

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Candida glabrata environmental stress response involves Saccharomyces cerevisiae Msn2/4 orthologous transcription factors

29 September 2017

1 reference

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Analysis of gene-expression data using J-Express

29 September 2017

1 reference

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Membrane transporters and protein traffic networks differentially affecting metal tolerance: a genomic phenotyping study in yeast

29 September 2017

1 reference

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High resistance to oxidative stress in the fungal pathogen Candida glabrata is mediated by a single catalase, Cta1p, and is controlled by the transcription factors Yap1p, Skn7p, Msn2p, and Msn4p.

29 September 2017

1 reference

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A systems approach to delineate functions of paralogous transcription factors: role of the Yap family in the DNA damage response.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Yap5 is an iron-responsive transcriptional activator that regulates vacuolar iron storage in yeast

29 September 2017

1 reference

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Interaction of HapX with the CCAAT-binding complex--a novel mechanism of gene regulation by iron

29 September 2017

1 reference

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Nosocomial fungal infections: epidemiology, diagnosis, and treatment

29 September 2017

1 reference

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The S. cerevisiae Yap1 and Yap2 transcription factors share a common cadmium-sensing domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Goulphar: rapid access and expertise for standard two-color microarray normalization methods

29 September 2017

1 reference

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Pdr1 regulates multidrug resistance in Candida glabrata: gene disruption and genome-wide expression studies.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Role of glutaredoxin-3 and glutaredoxin-4 in the iron regulation of the Aft1 transcriptional activator in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

A stress regulatory network for co-ordinated activation of proteasome expression mediated by yeast heat shock transcription factor.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

29 September 2017

1 reference

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Coordinated remodeling of cellular metabolism during iron deficiency through targeted mRNA degradation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Integrating phenotypic and expression profiles to map arsenic-response networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Transcriptional regulatory code of a eukaryotic genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Structure and evolution of transcriptional regulatory networks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

The Sko1p repressor and Gcn4p activator antagonistically modulate stress-regulated transcription in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Structural basis for the diversity of DNA recognition by bZIP transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Yeast putative transcription factors involved in salt tolerance.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Regulation of yAP-1 nuclear localization in response to oxidative stress

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

The Skn7 response regulator controls gene expression in the oxidative stress response of the budding yeast Saccharomyces cerevisiae

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

A new pathway for vacuolar cadmium sequestration in Saccharomyces cerevisiae: YCF1-catalyzed transport of bis(glutathionato)cadmium

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Deciphering the combinatorial DNA-binding code of the CCAAT-binding complex and the iron-regulatory basic region leucine zipper (bZIP) transcription factor HapX.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Identification of genomic binding sites for Candida glabrata Pdr1 transcription factor in wild-type and ρ0 cells.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Networks of bZIP protein-protein interactions diversified over a billion years of evolution

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Cap2-HAP complex is a critical transcriptional regulator that has dual but contrasting roles in regulation of iron homeostasis in Candida albicans

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Genomewide expression profile analysis of the Candida glabrata Pdr1 regulon

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Regulation of Candida glabrata oxidative stress resistance is adapted to host environment.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Cytosolic monothiol glutaredoxins function in intracellular iron sensing and trafficking via their bound iron-sulfur cluster

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Expression of YAP4 in Saccharomyces cerevisiae under osmotic stress

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Isolation of three contiguous genes, ACR1, ACR2 and ACR3, involved in resistance to arsenic compounds in the yeast Saccharomyces cerevisiae

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Stress-induced transcriptional activation mediated by YAP1 and YAP2 genes that encode the Jun family of transcriptional activators in Saccharomyces cerevisiae

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Cadmium tolerance mediated by the yeast AP-1 protein requires the presence of an ATP-binding cassette transporter-encoding gene, YCF1.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Inhibition of Yap2 activity by MAPKAP kinase Rck1 affects yeast tolerance to cadmium.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Yap7 is a transcriptional repressor of nitric oxide oxidase in yeasts, which arose from neofunctionalization after whole genome duplication

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Cytochrome c peroxidase is a mitochondrial heme-based H2O2 sensor that modulates antioxidant defense.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

The facultative intracellular pathogen Candida glabrata subverts macrophage cytokine production and phagolysosome maturation.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Rewiring of transcriptional regulatory networks: hierarchy, rather than connectivity, better reflects the importance of regulators.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Skn7p is involved in oxidative stress response and virulence of Candida glabrata

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Nicotinic acid limitation regulates silencing of Candida adhesins during UTI.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Analysis of the oxidative stress regulation of the Candida albicans transcription factor, Cap1p.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Yap1 and Skn7 control two specialized oxidative stress response regulons in yeast.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Cloning of the Candida glabrata TRP1 and HIS3 genes, and construction of their disruptant strains by sequential integrative transformation

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4860858

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

4 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.3389%2FFMICB.2016.00645

The bZip transcription factor Cgap1p is involved in multidrug resistance and required for activation of multidrug transporter gene CgFLR1 in Candida glabrata

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27242683

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

HapX-mediated iron homeostasis is essential for rhizosphere competence and virulence of the soilborne pathogen Fusarium oxysporum

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27242683

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.3389/FMICB.2016.00645

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27242683%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27242683%20AND%20SRC:MED&resulttype=core&format=json

7 June 2020

PubMed publication ID

27242683

1 reference