Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage (Q36983403)

17 August 2017

Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage (English)

1 reference

17 August 2017

1 reference

1 reference

4

1 reference

17 August 2017

Arcady Mushegian

12

0 references

Michael P. Washburn

object named as

Michael P Washburn

10

0 references

Lars F Westblade

2

object named as

Lars F Westblade

1 reference

17 August 2017

9

Brian T Chait

1 reference

17 August 2017

15

Konstantin Severinov

1 reference

17 August 2017

3

Manisha Goel

1 reference

17 August 2017

Dhruti Savalia

1

1 reference

17 August 2017

Priscilla Kemp

5

1 reference

17 August 2017

Natalja Akulenko

6

1 reference

17 August 2017

Olga Pavlova

7

1 reference

17 August 2017

Julio C Padovan

8

1 reference

17 August 2017

Hans-W Ackermann

11

1 reference

17 August 2017

Tarasii Gabisonia

13

1 reference

17 August 2017

Ian Molineux

14

1 reference

17 August 2017

language of work or name

English

0 references

publication date

11 January 2008

1 reference

Journal of Molecular Biology

17 August 2017

1 reference

17 August 2017

377

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17 August 2017

3

1 reference

17 August 2017

774-789

1 reference

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Protein repertoire of double-stranded DNA bacteriophages

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

A study on the correlation of nucleotide skews and the positioning of the origin of replication: different modes of replication in bacterial species

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Proteomic and genomic characterization of chromatin complexes at a boundary

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

The generalized transducing Salmonella bacteriophage ES18: complete genome sequence and DNA packaging strategy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Conserved translational frameshift in dsDNA bacteriophage tail assembly genes.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

29 September 2017

Bacteriophage genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Bacteriophage-Induced Modifications of Host RNA Polymerase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Origins of highly mosaic mycobacteriophage genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

29 September 2017

Bacteriophage T4 Genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

The extracytoplasmic function (ECF) sigma factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

RADARS, a bioinformatics solution that automates proteome mass spectral analysis, optimises protein identification, and archives data in a relational database

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Automatic identification of proteins with a MALDI-quadrupole ion trap mass spectrometer.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Frequency of morphological phage descriptions in the year 2000. Brief review

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

ProFound: an expert system for protein identification using mass spectrometric peptide mapping information

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Rapidly switchable matrix-assisted laser desorption/ionization and electrospray quadrupole-time-of-flight mass spectrometry for protein identification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

EMBOSS: the European Molecular Biology Open Software Suite

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Virioplankton: Viruses in Aquatic Ecosystems

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Improved microbial gene identification with GLIMMER

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Heuristic approach to deriving models for gene finding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Phages infecting Vibrio vulnificus are abundant and diverse in oysters (Crassostrea virginica) collected from the Gulf of Mexico

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Domain organization of the Escherichia coli RNA polymerase sigma 70 subunit

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Sequence of a 1.26-kb DNA fragment containing the structural gene for E.coli initiation factor IF3: presence of an AUU initiator codon

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Thermus thermophilus bacteriophage phiYS40 genome and proteomic characterization of virions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Histidine-tagged RNA polymerase of Escherichia coli and transcription in solid phase.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

The present state of phage taxonomy.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Thermal unfolding pathway for the thermostable P22 tailspike endorhamnosidase

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Characterization of two Salmonella newport bacteriophages

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

KSY1, a lactococcal phage with a T7-like transcription.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Whole genome sequencing of a novel temperate bacteriophage of P. aeruginosa: evidence of tRNA gene mediating integration of the phage genome into the host bacterial chromosome.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Ig-like domains on bacteriophages: a tale of promiscuity and deceit

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Genome sequence and gene expression of Bacillus anthracis bacteriophage Fah.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Gene replacement without selection: regulated suppression of amber mutations in Escherichia coli

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

DNA packaging and developmental intermediates of a broad host range Vibrio vulnificus bacteriophage 71A-6.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2587145

Proteomic Analysis by Multidimensional Protein Identification Technology

4 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18294652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Expression of the Escherichia coli pcnB gene is translationally limited using an inefficient start codon: a second chromosomal example of translation initiated at AUU

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18294652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The tale of two RNA polymerases: transcription profiling and gene expression strategy of bacteriophage Xp10

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18294652

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.JMB.2007.12.077

1 reference

17 August 2017

1 reference

17 August 2017

1 reference