Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds. (Q37142683)

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18 March 2020

title

Protein-protein docking by fast generalized Fourier transforms on 5D rotational manifolds (English)

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18 March 2020

7

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18 March 2020

David W. Ritchie

8

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18 March 2020

Sandor Vajda

9

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18 March 2020

Dima Kozakov

10

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18 March 2020

author name string

Dzmitry Padhorny

1

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18 March 2020

Andrey Kazennov

2

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18 March 2020

Brandon S Zerbe

3

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18 March 2020

Kathryn A Porter

4

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18 March 2020

Bing Xia

5

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18 March 2020

Scott E Mottarella

6

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18 March 2020

language of work or name

English

0 references

publication date

13 July 2016

1 reference

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Proceedings of the National Academy of Sciences of the United States of America

18 March 2020

published in

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18 March 2020

volume

113

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18 March 2020

page(s)

E4286-93

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issue

30

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How good is automated protein docking?

18 March 2020

cites work

1 reference

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FRODOCK: a new approach for fast rotational protein-protein docking

6 September 2017

1 reference

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Convergence and combination of methods in protein-protein docking

6 September 2017

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DARS (Decoys As the Reference State) potentials for protein-protein docking

6 September 2017

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Principles of flexible protein-protein docking

6 September 2017

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Recent Progress and Future Directions in Protein-Protein Docking

6 September 2017

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Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations

6 September 2017

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HADDOCK: a protein-protein docking approach based on biochemical or biophysical information

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Prediction of protein-protein interactions by docking methods.

6 September 2017

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Modelling protein docking using shape complementarity, electrostatics and biochemical information

6 September 2017

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Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques

6 September 2017

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Binding interface prediction by combining protein-protein docking results

6 September 2017

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PIE-efficient filters and coarse grained potentials for unbound protein-protein docking

27 June 2018

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Integrating statistical pair potentials into protein complex prediction.

27 June 2018

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Protein-protein docking benchmark version 4.0.

27 June 2018

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Ultra-fast FFT protein docking on graphics processors.

3 September 2018

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Accelerating and focusing protein-protein docking correlations using multi-dimensional rotational FFT generating functions

3 September 2018

1 reference

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PIPER: an FFT-based protein docking program with pairwise potentials.

3 September 2018

1 reference

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Identification of protein-protein interaction sites from docking energy landscapes.

3 September 2018

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ZDOCK: an initial-stage protein-docking algorithm.

3 September 2018

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Protein docking using spherical polar Fourier correlations.

3 September 2018

1 reference

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Identification by NMR of the binding surface for the histidine-containing phosphocarrier protein HPr on the N-terminal domain of enzyme I of the Escherichia coli phosphotransferase system.

3 September 2018

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Low-resolution docking: prediction of complexes for underdetermined structures.

3 September 2018

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The Design and Implementation of FFTW3

3 September 2018

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Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1603929113

Comparative protein structure modeling using Modeller

21 January 2018

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Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1603929113

Fast rotational matching of rigid bodies by fast Fourier transform acceleration of five degrees of freedom

21 January 2018

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Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1603929113

Protein docking using continuum electrostatics and geometric fit

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27412858

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.1603929113

1 reference

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18 March 2020

1 reference

0 references

1 reference

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18 March 2020

1 reference