Probing RNA structure and function by nucleotide analog interference mapping (Q37144723)

18 August 2017

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title

Probing RNA structure and function by nucleotide analog interference mapping (English)

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18 August 2017

Jesse C Cochrane

1

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18 August 2017

Scott A Strobel

series ordinal

2

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18 August 2017

publication date

1 September 2004

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Current protocols in nucleic acid chemistry / editorial board, Serge L. Beaucage ... [et al.]

18 August 2017

published in

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18 August 2017

volume

Chapter 6

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18 August 2017

page(s)

Unit 6.9

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Thiophilic metal ion rescue of phosphorothioate interference within the Tetrahymena ribozyme P4-P6 domain

18 August 2017

cites work

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Biochemical detection of monovalent metal ion binding sites within RNA.

21 January 2018

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Crystal structure of the ribonucleoprotein core of the signal recognition particle

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

Structural and energetic analysis of RNA recognition by a universally conserved protein from the signal recognition particle

21 January 2018

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https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

Defining functional groups, core structural features and inter-domain tertiary contacts essential for group II intron self-splicing: a NAIM analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

Self-splicing of group I introns

21 January 2018

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Quantitation of free energy profiles in RNA-ligand interactions by nucleotide analog interference mapping.

21 January 2018

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Enzymatic synthesis of 2'-modified nucleic acids: identification of important phosphate and ribose moieties in RNase P substrates

21 January 2018

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Nucleoside phosphorothioates

21 January 2018

1 reference

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Enzymatic RNA synthesis with deoxynucleoside 5'‐O‐(1‐thiotriphosphates)

21 January 2018

1 reference

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DNA and RNA sequence determination based on phosphorothioate chemistry

21 January 2018

1 reference

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Stereospecificity of nucleases towards phosphorothioate-substituted RNA: stereochemistry of transcription by T7 RNA polymerase.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

Ionization of a Critical Adenosine Residue in theNeurosporaVarkud Satellite Ribozyme Active Site†

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

An efficient ligation reaction promoted by a Varkud Satellite ribozyme with extended 5'- and 3'-termini

21 January 2018

1 reference

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NAIM and site-specific functional group modification analysis of RNase P RNA: magnesium dependent structure within the conserved P1-P4 multihelix junction contributes to catalysis.

21 January 2018

1 reference

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Identification by modification-interference of purine N-7 and ribose 2'-OH groups critical for catalysis by bacterial ribonuclease P.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

The chemical basis of adenosine conservation throughout the Tetrahymena ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

pK(a) perturbation in genomic Hepatitis Delta Virus ribozyme catalysis evidenced by nucleotide analogue interference mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

Efficient synthesis of nucleic acids heavily modified with non-canonical ribose 2'-groups using a mutantT7 RNA polymerase (RNAP).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

N 2-methylguanosine is iso-energetic with guanosine in RNA duplexes and GNRA tetraloops

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

Nucleotide analog interference mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

Nucleotide analog interference mapping of the hairpin ribozyme: implications for secondary and tertiary structure formation.

21 January 2018

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Identification of phosphate groups involved in metal binding and tertiary interactions in the core of the Neurospora VS ribozyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

Identification of A-minor tertiary interactions within a bacterial group I intron active site by 3-deazaadenosine interference mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

Defining the chemical groups essential for Tetrahymena group I intron function by nucleotide analog interference mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

A minor groove RNA triple helix within the catalytic core of a group I intron

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

An important base triple anchors the substrate helix recognition surface within the Tetrahymena ribozyme active site

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

Exclusive interaction of the 15.5 kD protein with the terminal box C/D motif of a methylation guide snoRNP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

A double-filter method for nitrocellulose-filter binding: application to protein-nucleic acid interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

Complementary sets of noncanonical base pairs mediate RNA helix packing in the group I intron active site

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2F0471142700.NC0609S17

10.1002/0471142700.NC0609S17

21 January 2018

Identifiers

DOI

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18 August 2017

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