Assembly of functional ribonucleoprotein complexes by AU-rich element RNA-binding protein 1 (AUF1) requires base-dependent and -independent RNA contacts (Q37201249)

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scientific article published on 12 August 2013

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English	Assembly of functional ribonucleoprotein complexes by AU-rich element RNA-binding protein 1 (AUF1) requires base-dependent and -independent RNA contacts	scientific article published on 12 August 2013

Statements

scholarly article

1 reference

Europe PubMed Central

18 August 2017

Assembly of functional ribonucleoprotein complexes by AU-rich element RNA-binding protein 1 (AUF1) requires base-dependent and -independent RNA contacts (English)

1 reference

Europe PubMed Central

18 August 2017

ribonucleoprotein complex

1 reference

based on heuristic

inferred from title

RNA-binding proteins

1 reference

based on heuristic

inferred from title

author name string

Beth E Zucconi

1

1 reference

Europe PubMed Central

18 August 2017

Gerald M Wilson

2

1 reference

Europe PubMed Central

18 August 2017

language of work or name

0 references

publication date

12 August 2013

1 reference

Europe PubMed Central

18 August 2017

Journal of Biological Chemistry

1 reference

Europe PubMed Central

18 August 2017

288

1 reference

Europe PubMed Central

18 August 2017

39

1 reference

Europe PubMed Central

18 August 2017

28034-28048

1 reference

Europe PubMed Central

18 August 2017

The structure of the ARE-binding domains of Hu antigen R (HuR) undergoes conformational changes during RNA binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Combinatorial mRNA binding by AUF1 and Argonaute 2 controls decay of selected target mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Solution structure of the two RNA recognition motifs of hnRNP A1 using segmental isotope labeling: how the relative orientation between RRMs influences the nucleic acid binding topology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Post-transcriptional control of gene expression by AUF1: mechanisms, physiological targets, and regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Hsp70 is a novel posttranscriptional regulator of gene expression that binds and stabilizes selected mRNAs containing AU-rich elements

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

The regulation of mRNA stability in mammalian cells: 2.0.

1 reference

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6 September 2017

Regulation of cytoplasmic mRNA decay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Different modes of interaction by TIAR and HuR with target RNA and DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Alternatively expressed domains of AU-rich element RNA-binding protein 1 (AUF1) regulate RNA-binding affinity, RNA-induced protein oligomerization, and the local conformation of bound RNA ligands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

AUF1 p42 isoform selectively controls both steady-state and PGE2-induced FGF9 mRNA decay.

1 reference

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6 September 2017

Post-transcriptional control during chronic inflammation and cancer: a focus on AU-rich elements

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6 September 2017

RNA looping by PTB: Evidence using FRET and NMR spectroscopy for a role in splicing repression

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6 September 2017

Contributions of the histidine side chain and the N-terminal alpha-amino group to the binding thermodynamics of oligopeptides to nucleic acids as a function of pH.

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6 September 2017

Chapter 3. Assays of adenylate uridylate-rich element-mediated mRNA decay in cells

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Identification of a signature motif in target mRNAs of RNA-binding protein AUF1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

AUF1 isoform-specific regulation of anti-inflammatory IL10 expression in monocytes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Chaperone Hsp27, a novel subunit of AUF1 protein complexes, functions in AU-rich element-mediated mRNA decay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Functional analysis of KSRP interaction with the AU-rich element of interleukin-8 and identification of inflammatory mRNA targets

1 reference

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6 September 2017

Specific protein domains mediate cooperative assembly of HuR oligomers on AU-rich mRNA-destabilizing sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

The highways and byways of mRNA decay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

14-3-3sigma is a p37 AUF1-binding protein that facilitates AUF1 transport and AU-rich mRNA decay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Assembly of AUF1 with eIF4G-poly(A) binding protein complex suggests a translation function in AU-rich mRNA decay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

AU-rich elements and associated factors: are there unifying principles?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

ARED 3.0: the large and diverse AU-rich transcriptome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

A hairpin-like structure within an AU-rich mRNA-destabilizing element regulates trans-factor binding selectivity and mRNA decay kinetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Structure of hnRNP D complexed with single-stranded telomere DNA and unfolding of the quadruplex by heterogeneous nuclear ribonucleoprotein D.

1 reference

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6 September 2017

Concurrent versus individual binding of HuR and AUF1 to common labile target mRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Roles of AUF1 isoforms, HuR and BRF1 in ARE-dependent mRNA turnover studied by RNA interference

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Polarization of the fluorescence of macromolecules. I. Theory and experimental method

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6 September 2017

Selective degradation of AU-rich mRNAs promoted by the p37 AUF1 protein isoform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Regulation of A + U-rich element-directed mRNA turnover involving reversible phosphorylation of AUF1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Phosphorylation of p40AUF1 regulates binding to A + U-rich mRNA-destabilizing elements and protein-induced changes in ribonucleoprotein structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Distinct RNP complexes of shuttling hnRNP proteins with pre-mRNA and mRNA: candidate intermediates in formation and export of mRNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Two functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNA

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Folding of A+U-rich RNA elements modulates AUF1 binding. Potential roles in regulation of mRNA turnover

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Down-regulation of cyclin D1 expression by prostaglandin A(2) is mediated by enhanced cyclin D1 mRNA turnover

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A nuclear matrix-associated factor, SAF-B, interacts with specific isoforms of AUF1/hnRNP D

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3784716

6 September 2017

Assembly of AUF1 oligomers on U-rich RNA targets by sequential dimer association

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Crystal structure of the two-RRM domain of hnRNP A1 (UP1) complexed with single-stranded telomeric DNA

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Control of mRNA decay by heat shock-ubiquitin-proteasome pathway

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Structure and genomic organization of the human AUF1 gene: alternative pre-mRNA splicing generates four protein isoforms

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Fluorescence anisotropy: rapid, quantitative assay for protein-DNA and protein-protein interaction.

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Kinetic and thermodynamic analysis of the interaction between TRAP (trp RNA-binding attenuation protein) of Bacillus subtilis and trp leader RNA.

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Coupling of local folding to site-specific binding of proteins to DNA

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Ion-exchange reactions of proteins during DNA binding

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Purification, characterization, and cDNA cloning of an AU-rich element RNA-binding protein, AUF1

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The mRNA poly(A)-binding protein: localization, abundance, and RNA-binding specificity.

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Role of the hydrophobic effect in stability of site-specific protein-DNA complexes

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Na+ effects on transitions of DNA and polynucleotides of variable linear charge density

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Ion effects on ligand-nucleic acid interactions

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Location of cyanine-3 on double-stranded DNA: importance for fluorescence resonance energy transfer studies

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural remodeling of an A + U-rich RNA element by cation or AUF1 binding

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https://pubmed.ncbi.nlm.nih.gov/23940053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein-RNA recognition

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https://pubmed.ncbi.nlm.nih.gov/23940053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

AUF1 binding affinity to A+U-rich elements correlates with rapid mRNA degradation

1 reference

https://pubmed.ncbi.nlm.nih.gov/23940053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification and characterization of proteins binding A + U-rich elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/23940053

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1074/JBC.M113.489559

1 reference

Europe PubMed Central

18 August 2017

1 reference

Europe PubMed Central

18 August 2017

1 reference

Europe PubMed Central

18 August 2017

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