Replica exchange statistical temperature Monte Carlo (Q37329984)

19 August 2017

Replica exchange statistical temperature Monte Carlo (English)

1 reference

19 August 2017

0 references

Jaegil Kim

1

1 reference

19 August 2017

Thomas Keyes

series ordinal

2

1 reference

19 August 2017

John E Straub

series ordinal

3

1 reference

19 August 2017

language of work or name

English

0 references

publication date

1 March 2009

1 reference

Journal of Chemical Physics

19 August 2017

1 reference

19 August 2017

130

1 reference

19 August 2017

12

1 reference

19 August 2017

124112

1 reference

First-principles simulation of supercooled liquid alloys.

19 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Statistical temperature molecular dynamics: application to coarse-grained beta-barrel-forming protein models

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Hydrophobic aided replica exchange: an efficient algorithm for protein folding in explicit solvent

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Modified replica exchange simulation methods for local structure refinement

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Replica exchange with solute tempering: a method for sampling biological systems in explicit water

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Simulations of the pressure and temperature unfolding of an alpha-helical peptide.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Performance Limitations of Flat-Histogram Methods

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Folding a protein in a computer: An atomic description of the folding/unfolding of protein A

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Can a continuum solvent model reproduce the free energy landscape of a beta -hairpin folding in water?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Determining the density of states for classical statistical models: A random walk algorithm to produce a flat histogram

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Generalized-ensemble algorithms for molecular simulations of biopolymers

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Efficient, Multiple-Range Random Walk Algorithm to Calculate the Density of States

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Novel methods of sampling phase space in the simulation of biological systems

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Simulation via direct computation of partition functions

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

New Monte Carlo algorithm: Entropic sampling.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Multiple scaling replica exchange for the conformational sampling of biomolecules in explicit water.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Structure optimization and folding mechanisms of off-lattice protein models using statistical temperature molecular dynamics simulation: Statistical temperature annealing.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Accelerating the replica exchange method through an efficient all-pairs exchange.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Replica exchange with dynamical scaling.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Smart resolution replica exchange: an efficient algorithm for exploring complex energy landscapes.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Statistical-temperature Monte Carlo and molecular dynamics algorithms.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Hybrid Monte Carlo simulation of a glass-forming binary mixture.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

On the convergence of parallel tempering Monte Carlo simulations of LJ38.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Performances of Wang-Landau algorithms for continuous systems.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Multiple structural transformations in Lennard-Jones clusters: generic versus size-specific behavior.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Optimized parallel tempering simulations of proteins.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Resolution exchange simulation.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Size-temperature phase diagram for small Lennard-Jones clusters

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

The microcanonical thermodynamics of finite systems: the microscopic origin of condensation and phase separations, and the conditions for heat flow from lower to higher temperatures.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Optimal allocation of replicas in parallel tempering simulations.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

The incomplete beta function law for parallel tempering sampling of classical canonical systems.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Dynamical origin of enhanced conformational searches of Tsallis statistics sampling

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Replica-exchange method using the generalized effective potential

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Replica-exchange molecular dynamics method for protein folding

2 September 2018

1 reference

Replica-exchange molecular dynamics simulation for supercooled liquids

21 January 2018

1 reference

Influence of Go-like interactions on global shapes of energy landscapes in beta-barrel forming model proteins: inherent structure analysis and statistical temperature molecular dynamics simulation

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2736574

Generalized-ensemble Monte Carlo method for systems with rough energy landscape

20 October 2018

1 reference

Replica-exchange multicanonical algorithm and multicanonical replica-exchange method for simulating systems with rough energy landscape

21 January 2018

1 reference

Replica-exchange multicanonical and multicanonical replica-exchange Monte Carlo simulations of peptides. II. Application to a more complex system

21 January 2018

1 reference

Generalized simulated tempering realized on expanded ensembles of non-Boltzmann weights

21 January 2018

1 reference

12 December 2020

Selection of temperature intervals for parallel-tempering simulations

1 reference

12 December 2020

Low-temperature structural transitions: circumventing the broken-ergodicity problem

1 reference

12 December 2020

Coexistence in finite systems

1 reference

12 December 2020

Microcanonical Analyses of Peptide Aggregation Processes

1 reference

12 December 2020

Optimized Monte Carlo data analysis

1 reference

12 December 2020

Statistical thermodynamics of the cluster solid-liquid transition

1 reference

12 December 2020

All-exchanges parallel tempering

1 reference

12 December 2020

New approach to spin-glass simulations

1 reference

12 December 2020

Identifiers

DOI

10.1063/1.3095422

1 reference

19 August 2017

1 reference

19 August 2017

PubMed publication ID

19334813

1 reference