A novel hybrid yeast-human network analysis reveals an essential role for FNBP1L in antibacterial autophagy (Q37363790)

19 August 2017

A novel hybrid yeast-human network analysis reveals an essential role for FNBP1L in antibacterial autophagy (English)

1 reference

19 August 2017

0 references

Alan Huett

1

0 references

Masaaki Komatsu

object named as

Masaaki Komatsu

5

0 references

Mark Joseph Daly

6

object named as

Mark J Daly

1 reference

19 August 2017

8

Ramnik J Xavier

1 reference

19 August 2017

Aylwin Ng

2

1 reference

19 August 2017

Zhifang Cao

3

1 reference

19 August 2017

Petric Kuballa

4

1 reference

19 August 2017

Daniel K Podolsky

7

1 reference

19 August 2017

language of work or name

English

0 references

publication date

1 April 2009

1 reference

19 August 2017

Journal of Immunology

1 reference

19 August 2017

182

1 reference

19 August 2017

8

1 reference

19 August 2017

4917-4930

1 reference

describes a project that uses

19 August 2017

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2752416/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease

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The Atg8 conjugation system is indispensable for proper development of autophagic isolation membranes in mice

6 September 2017

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Atg8 controls phagophore expansion during autophagosome formation

6 September 2017

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An in vivo map of the yeast protein interactome

6 September 2017

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FIP200, a ULK-interacting protein, is required for autophagosome formation in mammalian cells

6 September 2017

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Rab5 modulates aggregation and toxicity of mutant huntingtin through macroautophagy in cell and fly models of Huntington disease

6 September 2017

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The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy

6 September 2017

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Bacterial actin assembly requires toca-1 to relieve N-wasp autoinhibition

6 September 2017

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Systems analysis of chaperone networks in the malarial parasite Plasmodium falciparum

6 September 2017

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Autophagosome formation: core machinery and adaptations

6 September 2017

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Bif-1 interacts with Beclin 1 through UVRAG and regulates autophagy and tumorigenesis

6 September 2017

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Differential regulation of caspase-1 activation, pyroptosis, and autophagy via Ipaf and ASC in Shigella-infected macrophages

6 September 2017

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Unravelling the pathogenesis of inflammatory bowel disease

6 September 2017

1 reference

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ADD66, a gene involved in the endoplasmic reticulum-associated degradation of alpha-1-antitrypsin-Z in yeast, facilitates proteasome activity and assembly.

6 September 2017

1 reference

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Expression of the phospholipid scramblase (PLSCR) gene family during the acute phase response

6 September 2017

1 reference

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Sequence variants in the autophagy gene IRGM and multiple other replicating loci contribute to Crohn's disease susceptibility

6 September 2017

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Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis

6 September 2017

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A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1

6 September 2017

1 reference

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Antigen-loading compartments for major histocompatibility complex class II molecules continuously receive input from autophagosomes

6 September 2017

1 reference

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MINT: the Molecular INTeraction database

6 September 2017

1 reference

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Differential activation and function of Rho GTPases during Salmonella-host cell interactions

6 September 2017

1 reference

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Caspase inhibitors promote alternative cell death pathways

6 September 2017

1 reference

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Human IRGM induces autophagy to eliminate intracellular mycobacteria

6 September 2017

1 reference

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Regulation of neuronal morphology by Toca-1, an F-BAR/EFC protein that induces plasma membrane invagination.

6 September 2017

1 reference

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Suppression of basal autophagy in neural cells causes neurodegenerative disease in mice

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

The negative c-Myc target onzin affects proliferation and apoptosis via its obligate interaction with phospholipid scramblase 1

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Microtubules facilitate autophagosome formation and fusion of autophagosomes with endosomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Coordination between the actin cytoskeleton and membrane deformation by a novel membrane tubulation domain of PCH proteins is involved in endocytosis

6 September 2017

1 reference

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pSTIING: a 'systems' approach towards integrating signalling pathways, interaction and transcriptional regulatory networks in inflammation and cancer.

6 September 2017

1 reference

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Human protein reference database--2006 update

6 September 2017

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Dynamin and the actin cytoskeleton cooperatively regulate plasma membrane invagination by BAR and F-BAR proteins

6 September 2017

1 reference

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The WASP/Las17p-interacting protein Bzz1p functions with Myo5p in an early stage of endocytosis.

6 September 2017

1 reference

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Bcl-2 antiapoptotic proteins inhibit Beclin 1-dependent autophagy

6 September 2017

1 reference

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VISA is an adapter protein required for virus-triggered IFN-beta signaling

6 September 2017

1 reference

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Identification and characterization of MAVS, a mitochondrial antiviral signaling protein that activates NF-kappaB and IRF 3

6 September 2017

1 reference

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MILANO--custom annotation of microarray results using automatic literature searches

6 September 2017

1 reference

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CX3CR1-mediated dendritic cell access to the intestinal lumen and bacterial clearance

6 September 2017

1 reference

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Phospholipid scramblase 1 potentiates the antiviral activity of interferon

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Toca-1 mediates Cdc42-dependent actin nucleation by activating the N-WASP-WIP complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

A novel dynamin-associating molecule, formin-binding protein 17, induces tubular membrane invaginations and participates in endocytosis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Java Treeview--extensible visualization of microarray data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

RNAi-mediated Hip1R silencing results in stable association between the endocytic machinery and the actin assembly machinery

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Saccharomyces cerevisiae Bzz1p is implicated with type I myosins in actin patch polarization and is able to recruit actin-polymerizing machinery in vitro

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Normal hemostasis but defective hematopoietic response to growth factors in mice deficient in phospholipid scramblase 1

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Salmonella maintains the integrity of its intracellular vacuole through the action of SifA.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Comparison of the complete protein sets of worm and yeast: orthology and divergence

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Large-scale taxonomic profiling of eukaryotic model organisms: a comparison of orthologous proteins encoded by the human, fly, nematode, and yeast genomes.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Cytoplasm-to-vacuole targeting and autophagy employ the same machinery to deliver proteins to the yeast vacuole

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Autophagy gene-dependent clearance of apoptotic cells during embryonic development

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Antileukemic roles of human phospholipid scramblase 1 gene, evidence from inducible PLSCR1-expressing leukemic cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Escape of intracellular Shigella from autophagy

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Interaction of the Salmonella-containing vacuole with the endocytic recycling system.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

The rab7 GTPase controls the maturation of Salmonella typhimurium-containing vacuoles in HeLa cells

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Genetic interactions between Drosophila melanogaster Atg1 and paxillin reveal a role for paxillin in autophagosome formation

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Microtubules support production of starvation-induced autophagosomes but not their targeting and fusion with lysosomes.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Autophagy controls Salmonella infection in response to damage to the Salmonella-containing vacuole.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

Peroxisome degradation in Saccharomyces cerevisiae is dependent on machinery of macroautophagy and the Cvt pathway.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2752416

2 September 2018

Identifiers

DOI

10.4049/JIMMUNOL.0803050

1 reference

19 August 2017

1 reference

19 August 2017

1 reference