Tools for stools: the challenge of assessing human intestinal microbiota using molecular diagnostics (Q37478693)

20 August 2017

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title

Tools for stools: the challenge of assessing human intestinal microbiota using molecular diagnostics (English)

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20 August 2017

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Jean-François Brugère

1

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20 August 2017

Agnès Mihajlovski

2

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20 August 2017

Mohieddine Missaoui

3

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20 August 2017

Pierre Peyret

4

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20 August 2017

publication date

1 May 2009

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Expert Review of Molecular Diagnostics: new diagnostic technologies are set to revolutionise healthcare

20 August 2017

published in

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20 August 2017

volume

9

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20 August 2017

issue

4

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20 August 2017

page(s)

353-365

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20 August 2017

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Gastrointestinal microbiology enters the metagenomics era.

21 January 2018

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The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

21 January 2018

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Development of the human infant intestinal microbiota

21 January 2018

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Resilience of the dominant human fecal microbiota upon short-course antibiotic challenge

21 January 2018

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Diversity of the human intestinal microbial flora

21 January 2018

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Bacteria of dental caries in primary and permanent teeth in children and young adults

21 January 2018

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Identification of bacteria in endodontic infections by sequence analysis of 16S rDNA clone libraries

21 January 2018

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Molecular analysis of bacteria in asymptomatic and symptomatic endodontic infections

21 January 2018

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Bacterial diversity within the human subgingival crevice

21 January 2018

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Periodontal infections cause changes in traditional and novel cardiovascular risk factors: results from a randomized controlled clinical trial

21 January 2018

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The salivary microbiota as a diagnostic indicator of oral cancer: a descriptive, non-randomized study of cancer-free and oral squamous cell carcinoma subjects

21 January 2018

1 reference

The indigenous gastrointestinal microflora

21 January 2018

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How host-microbial interactions shape the nutrient environment of the mammalian intestine

21 January 2018

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Recognition of commensal microflora by toll-like receptors is required for intestinal homeostasis

21 January 2018

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Angiogenins: a new class of microbicidal proteins involved in innate immunity

21 January 2018

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Developmental regulation of intestinal angiogenesis by indigenous microbes via Paneth cells

21 January 2018

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The gut microbiota as an environmental factor that regulates fat storage

21 January 2018

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Carbohydrate terminology and classification

21 January 2018

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Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut

21 January 2018

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Regulation of short-chain fatty acid production

21 January 2018

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Colonic health: fermentation and short chain fatty acids

21 January 2018

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Review article: the role of butyrate on colonic function.

21 January 2018

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Cancer incidence and mortality in Europe, 2004

21 January 2018

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Rarity of colon cancer in Africans is associated with low animal product consumption, not fiber

21 January 2018

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Nutrition and dietary carcinogens

21 January 2018

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Energy intake, physical activity, energy balance, and cancer: epidemiologic evidence

21 January 2018

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Sulphate reducing bacteria and hydrogen metabolism in the human large intestine

21 January 2018

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Evidence that hydrogen sulfide is a genotoxic agent.

21 January 2018

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Evaluation of fecal mutagenicity and colorectal cancer risk

21 January 2018

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Microbial ecology: human gut microbes associated with obesity

21 January 2018

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Human colonic microbiota associated with diet, obesity and weight loss

21 January 2018

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Reduced diversity of faecal microbiota in Crohn's disease revealed by a metagenomic approach

21 January 2018

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Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

21 January 2018

1 reference

Nutrition and colonic health: the critical role of the microbiota

21 January 2018

1 reference

Gut microbiota composition and development of atopic manifestations in infancy: the KOALA Birth Cohort Study

21 January 2018

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Review article: prebiotics in the gastrointestinal tract

21 January 2018

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Micro-eukaryotic diversity of the human distal gut microbiota: qualitative assessment using culture-dependent and -independent analysis of faeces.

21 January 2018

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Competition for hydrogen by human faecal bacteria: evidence for the predominance of methane producing bacteria

21 January 2018

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A putative new order of methanogenic Archaea inhabiting the human gut, as revealed by molecular analyses of the mcrA gene

21 January 2018

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Methanogenic archaea in health and disease: a novel paradigm of microbial pathogenesis

21 January 2018

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Metagenomic analyses of an uncultured viral community from human feces

21 January 2018

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Molecular monitoring of succession of bacterial communities in human neonates

21 January 2018

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Factors influencing the composition of the intestinal microbiota in early infancy

21 January 2018

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A core gut microbiome in obese and lean twins

21 January 2018

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Influence of major histocompatibility complex on bacterial composition of fecal flora

21 January 2018

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Defining the normal bacterial flora of the oral cavity

21 January 2018

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Bacterial biota in the human distal esophagus.

21 January 2018

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Microbial ecology of the gastrointestinal tract

21 January 2018

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Molecular analysis of the bacterial microbiota in the human stomach

21 January 2018

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Measurement of gastrointestinal pH profiles in normal ambulant human subjects

21 January 2018

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Molecular analysis of jejunal, ileal, caecal and recto-sigmoidal human colonic microbiota using 16S rRNA gene libraries and terminal restriction fragment length polymorphism

21 January 2018

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Molecular diversity, cultivation, and improved detection by fluorescent in situ hybridization of a dominant group of human gut bacteria related to Roseburia spp. or Eubacterium rectale

21 January 2018

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Quantification of bacterial groups within human fecal flora by oligonucleotide probe hybridization

21 January 2018

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Diversity of the human gastrointestinal tract microbiota revisited.

21 January 2018

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Ecology. Dipping into the rare biosphere.

21 January 2018

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Cultivation of recalcitrant microbes: cells are alive, well and revealing their secrets in the 21st century laboratory

21 January 2018

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Cultivating the uncultured

21 January 2018

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Environmental Diversity of Bacteria and Archaea

21 January 2018

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Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria

21 January 2018

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Molecular microbial ecology: land of the one-eyed king

21 January 2018

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Web-based phylogenetic assignment tool for analysis of terminal restriction fragment length polymorphism profiles of microbial communities

21 January 2018

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Molecular analysis of the gut microbiota of identical twins with Crohn's disease

21 January 2018

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Variation in 16S-23S rRNA intergenic spacer regions among Bacillus subtilis 168 isolates

21 January 2018

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Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease

21 January 2018

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Culture-independent analysis of the gut microbiota in colorectal cancer and polyposis

21 January 2018

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Streptococcus suis serotypes characterized by analysis of chaperonin 60 gene sequences

21 January 2018

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Community genomics in microbial ecology and evolution

21 January 2018

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Environmental genome shotgun sequencing of the Sargasso Sea

21 January 2018

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Whole-genome re-sequencing

21 January 2018

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Accurate multiplex polony sequencing of an evolved bacterial genome

21 January 2018

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Microbial diversity in the deep sea and the underexplored "rare biosphere"

21 January 2018

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Highly parallel microbial diagnostics using oligonucleotide microarrays.

21 January 2018

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Oligonucleotide microarrays in microbial diagnostics

21 January 2018

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PhylArray: phylogenetic probe design algorithm for microarray

21 January 2018

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GoArrays: highly dynamic and efficient microarray probe design.

21 January 2018

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Microarray applications in microbial ecology research

21 January 2018

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High-density microarray of small-subunit ribosomal DNA probes

21 January 2018

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High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment

21 January 2018

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Development and validation of a diagnostic microbial microarray for methanotrophs

21 January 2018

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Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays

21 January 2018

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Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications

21 January 2018

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Metagenomic profiling: microarray analysis of an environmental genomic library

21 January 2018

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Genomic interspecies microarray hybridization: rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames

21 January 2018

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The isotope array, a new tool that employs substrate-mediated labeling of rRNA for determination of microbial community structure and function

21 January 2018

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High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota.

21 January 2018

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Metagenomic analysis of the human distal gut microbiome

21 January 2018

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Design and evaluation of oligonucleotide-microarray method for the detection of human intestinal bacteria in fecal samples.

21 January 2018

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Detection and identification of intestinal pathogens in clinical specimens using DNA microarrays

21 January 2018

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Comparative study of bacterial groups within the human cecal and fecal microbiota

21 January 2018

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Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces

21 January 2018

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Isolation of RNA from bacterial samples of the human gastrointestinal tract.

21 January 2018

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DNA isolation protocols affect the detection limit of PCR approaches of bacteria in samples from the human gastrointestinal tract

21 January 2018

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Simultaneous recovery of extracellular and intracellular DNA suitable for molecular studies from marine sediments

21 January 2018

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21 January 2018

Identifiers

DOI

10.1586/ERM.09.16

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20 August 2017

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