ITS2 sequence-structure analysis in phylogenetics: a how-to manual for molecular systematics (Q37504906)

20 August 2017

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title

ITS2 sequence-structure analysis in phylogenetics: a how-to manual for molecular systematics (English)

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20 August 2017

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molecular phylogenetics

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Jörg Schultz

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20 August 2017

Matthias Wolf

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20 August 2017

publication date

1 August 2009

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Molecular Phylogenetics and Evolution

20 August 2017

published in

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20 August 2017

volume

52

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20 August 2017

issue

2

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20 August 2017

page(s)

520-523

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 August 2017

cites work

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Ribosomal ITS sequences and plant phylogenetic inference

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Structural partitioning, paired-sites models and evolution of the ITS transcript in Syzygium and Myrtaceae.

7 January 2021

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The significance of a coincidence between evolutionary landmarks found in mating affinity and a DNA sequence

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

ITS2 is a double-edged tool for eukaryote evolutionary comparisons

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Is there a molecular key to the level of "biological species" in eukaryotes? A DNA guide

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Exploring the phylogenetic utility of ITS sequences for animals: a test case for abalone (Haliotis).

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Modelling cross-hybridization on phylogenetic DNA microarrays increases the detection power of closely related species

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Resolution of phylogenetic conflict in large data sets by increased taxon sampling

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Fast folding and comparison of RNA secondary structures

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

ITS2 data corroborate a monophyletic chlorophycean DO-group (Sphaeropleales).

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

5.8S-28S rRNA interaction and HMM-based ITS2 annotation

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Using ITS2 secondary structure to create species-specific oligonucleotide probes for fungi

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

7 January 2021

Distinguishing species

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Better the devil you know? Guidelines for insightful utilization of nrDNA ITS in species-level evolutionary studies in plants

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

WWW-query: an on-line retrieval system for biological sequence banks

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Increased taxon sampling is advantageous for phylogenetic inference

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

The ITS2 Database II: homology modelling RNA structure for molecular systematics

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

MARNA: multiple alignment and consensus structure prediction of RNAs based on sequence structure comparisons.

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Coaxial stacking of helixes enhances binding of oligoribonucleotides and improves predictions of RNA folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

Homology modeling revealed more than 20,000 rRNA internal transcribed spacer 2 (ITS2) secondary structures

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

ProfDistS: (profile-) distance based phylogeny on sequence--structure alignments

7 January 2021

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

7 January 2021

Placozoa: at least two

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https://api.crossref.org/works/10.1016%2FJ.YMPEV.2009.01.008

10.1016/J.YMPEV.2009.01.008

7 January 2021

Identifiers

DOI

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20 August 2017

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