Predicting complex phenotype-genotype interactions to enable yeast engineering: Saccharomyces cerevisiae as a model organism and a cell factory. (Q37542238)

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scientific article published on 23 August 2013

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English	Predicting complex phenotype-genotype interactions to enable yeast engineering: Saccharomyces cerevisiae as a model organism and a cell factory.	scientific article published on 23 August 2013

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scholarly article

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21 February 2020

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Predicting complex phenotype-genotype interactions to enable yeast engineering: Saccharomyces cerevisiae as a model organism and a cell factory (English)

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21 February 2020

biomedical investigative technique

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19 September 2019

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2 October 2019

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22 October 2019

Saccharomyces cerevisiae

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based on heuristic

inferred from title

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based on heuristic

inferred from title

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based on heuristic

inferred from title

2

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Duygu Dikicioglu

1

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Stephen G Oliver

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23 August 2013

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Biotechnology Journal

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22 October 2019

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1017-1034

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Epigenetic epistatic interactions constrain the evolution of gene expression

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Comprehensive phenotypic analysis of single-gene deletion and overexpression strains of Saccharomyces cerevisiae

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The proteomics of quiescent and nonquiescent cell differentiation in yeast stationary-phase cultures.

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Genome-wide screen for inositol auxotrophy in Saccharomyces cerevisiae implicates lipid metabolism in stress response signaling

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System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae

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Transcriptional Regulation in Yeast during Diauxic Shift and Stationary Phase

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Environmental duress and epistasis: how does stress affect the strength of selection on new mutations?

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The uses of genome-wide yeast mutant collections

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Global analysis of nutrient control of gene expression in Saccharomyces cerevisiae during growth and starvation.

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Maximizing the potential of functional genomics

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Global mapping of the yeast genetic interaction network

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Discovering modes of action for therapeutic compounds using a genome-wide screen of yeast heterozygotes

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Saccharomyces cerevisiae phenotypes can be predicted by using constraint-based analysis of a genome-scale reconstructed metabolic network

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Selection and isolation of auxotrophic yeast mutants with the aid of antibiotics

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Dosage sensitivity and the evolution of gene families in yeast

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Genome-scale reconstruction of the Saccharomyces cerevisiae metabolic network

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Systematic screen for human disease genes in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Getting started with yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Auxotrophic yeast strains in fundamental and applied research.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Systematic genetic analysis with ordered arrays of yeast deletion mutants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

A functional genomics strategy that uses metabolome data to reveal the phenotype of silent mutations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Mating-type gene switching in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Marginal fitness contributions of nonessential genes in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Exploring the metabolic and genetic control of gene expression on a genomic scale

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

The molecular basis of genetic dominance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

The molecular basis of dominance.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Macromolecule Synthesis in Temperature-sensitive Mutants of Yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Genealogy of principal strains of the yeast genetic stock center

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

PET genes of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Metabolic control analysis: a survey of its theoretical and experimental development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

23 August 2017

Global control of cell growth in fission yeast and its coordination with the cell cycle.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

6 September 2017

Coordinating genome expression with cell size

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

6 September 2017

Non-coding RNAs in Saccharomyces cerevisiae: what is the function?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

6 September 2017

Bugs, drugs and chemical genomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

6 September 2017

PhenoM: a database of morphological phenotypes caused by mutation of essential genes in Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

6 September 2017

Competition experiments coupled with high-throughput analyses for functional genomics studies in yeast.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

6 September 2017

A brief history of TOR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

6 September 2017

Measuring growth rate in high-throughput growth phenotyping.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

6 September 2017

Epistatic relationships reveal the functional organization of yeast transcription factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

6 September 2017

The renaissance of continuous culture in the post-genomics age

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

6 September 2017

Modeling complex genetic interactions in a simple eukaryotic genome: actin displays a rich spectrum of complex haploinsufficiencies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

6 September 2017

Yeast cells can access distinct quiescent states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

14 September 2017

Identification of secondary targets of N-containing bisphosphonates in mammalian cells via parallel competition analysis of the barcoded yeast deletion collection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

14 September 2017

Gene function prediction from congruent synthetic lethal interactions in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

14 September 2017

Genome-wide Fitness Profiles Reveal a Requirement for Autophagy During Yeast Fermentation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

28 September 2017

Studies on Some Growth Factors of Yeasts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

28 September 2017

A prototrophic deletion mutant collection for yeast metabolomics and systems biology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

25 June 2018

Aneuploidy confers quantitative proteome changes and phenotypic variation in budding yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

25 June 2018

Genetic interactions between transcription factors cause natural variation in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

25 June 2018

Application of the comprehensive set of heterozygous yeast deletion mutants to elucidate the molecular basis of cellular chromium toxicity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

25 June 2018

Epistatic buffering of fitness loss in yeast double deletion strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

25 June 2018

Genes encoding subunits of stable complexes are clustered on the yeast chromosomes: an interpretation from a dosage balance perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

25 June 2018

Genomic profiling of drug sensitivities via induced haploinsufficiency.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

25 June 2018

Suitability of replacement markers for functional analysis studies in Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

25 June 2018

Effect of growth rate and substrate limitation on the composition and structure of the cell wall of Saccharomyces cerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

25 June 2018

A strategy for increasing an in vivo flux by genetic manipulations. The tryptophan system of yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

25 June 2018

Activation of calcineurin is mainly responsible for the calcium sensitivity of gene deletion mutations in the genome of budding yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Size homeostasis can be intrinsic to growing cell populations and explained without size sensing or signalling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

The critical size is set at a single-cell level by growth rate to attain homeostasis and adaptation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Systematic identification of gene annotation errors in the widely used yeast mutation collections.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Predicting phenotypic variation in yeast from individual genome sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Integrating high-throughput genetic interaction mapping and high-content screening to explore yeast spindle morphogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Novel strategy for yeast construction using delta-integration and cell fusion to efficiently produce ethanol from raw starch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Effects of the S288c genetic background and common auxotrophic markers on mitochondrial DNA function in Saccharomyces cerevisiae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Identification and characterization of high-flux-control genes of yeast through competition analyses in continuous cultures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Genome-wide analysis of barcoded Saccharomyces cerevisiae gene-deletion mutants in pooled cultures.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Modular epistasis in yeast metabolism.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Gene dosage balance in cellular pathways: implications for dominance and gene duplicability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

GENE DOSAGE AND GALACTOSE UTILIZATION BY SACCHAROMYCES TETRAPLOIDS

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Dissecting the architecture of a quantitative trait locus in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Network identification and flux quantification in the central metabolism of Saccharomyces cerevisiae under different conditions of glucose repression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

An interlaboratory comparison of physiological and genetic properties of four Saccharomyces cerevisiae strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3910164

1 September 2018

Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300138

21 January 2018

Ploidy evolution in the yeast Saccharomyces cerevisiae: a test of the nutrient limitation hypothesis.

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300138

21 January 2018

The synthetic genetic interaction spectrum of essential genes

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300138

21 January 2018

Genome-wide analysis of longevity in nutrient-deprived Saccharomyces cerevisiae reveals importance of recycling in maintaining cell viability

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300138

21 January 2018

Exploring Gene Function and Drug Action Using Chemogenomic Dosage Assays

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300138

21 January 2018

Increase in ploidy in yeasts as a response to stressing media

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300138

21 January 2018

A global view of epistasis

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300138

21 January 2018

Genome-wide genetic analysis of polyploidy in yeast

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300138

21 January 2018

Epistatic gene interactions in the control of division in fission yeast

1 reference

https://api.crossref.org/works/10.1002%2FBIOT.201300138

21 January 2018

Masking and purging mutations following EMS treatment in haploid, diploid and tetraploid yeast (Saccharomyces cerevisiae)

1 reference

https://pubmed.ncbi.nlm.nih.gov/24031036

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exploring the etiology of haploinsufficiency

1 reference

https://pubmed.ncbi.nlm.nih.gov/24031036

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Epistasis and hybrid sterility in Saccharomyces

1 reference

https://pubmed.ncbi.nlm.nih.gov/24031036

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Small fitness effects and weak genetic interactions between deleterious mutations in heterozygous loci of the yeast Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/24031036

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene dosage balance: deletions, duplications and dominance

1 reference

https://pubmed.ncbi.nlm.nih.gov/24031036

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Nuclear-mitochondrial epistasis for fitness in Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/24031036

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Standard YPD, even supplemented with extra nutrients, does not always compensate growth defects of Saccharomyces cerevisiae auxotrophic strains

1 reference

https://pubmed.ncbi.nlm.nih.gov/24031036

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metabolites as global regulators: a new view of protein regulation: systematic investigation of metabolite-protein interactions may help bridge the gap between genome-wide association studies and small molecule screening studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/24031036

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extreme calorie restriction and energy source starvation in Saccharomyces cerevisiae represent distinct physiological states

1 reference

https://pubmed.ncbi.nlm.nih.gov/24031036

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Chemical genetic profiling of the microtubule-targeting agent peloruside A in budding yeast Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/24031036

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/BIOT.201300138

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24031036%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24031036%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24031036%20AND%20SRC:MED&resulttype=core&format=json

21 February 2020

ResearchGate publication ID

0 references

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