DNA secondary structures and epigenetic determinants of cancer genome evolution (Q37657891)

21 August 2017

DNA secondary structures and epigenetic determinants of cancer genome evolution (English)

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21 August 2017

1

Subhajyoti De

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21 August 2017

2

Franziska Michor

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PMCID

3963273

21 August 2017

language of work or name

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3 July 2011

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Nature Structural & Molecular Biology

21 August 2017

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21 August 2017

18

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21 August 2017

8

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21 August 2017

950-955

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https://scigraph.springernature.com/pub.10.1038/nsmb.2089

21 August 2017

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cites work

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The landscape of somatic copy-number alteration across human cancers

23 August 2017

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23 August 2017

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Complex landscapes of somatic rearrangement in human breast cancer genomes

23 August 2017

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Biochemical techniques for the characterization of G-quadruplex structures: EMSA, DMS footprinting, and DNA polymerase stop assay

23 August 2017

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23 August 2017

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Genome-wide DNA methylation profiles in precancerous conditions and cancers

23 August 2017

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Non-B DNA structure-induced genetic instability and evolution

23 August 2017

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Mechanisms of change in gene copy number

23 August 2017

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G-quadruplex structures: in vivo evidence and function

23 August 2017

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A highly annotated whole-genome sequence of a Korean individual

23 August 2017

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Evolutionary breakpoints in the gibbon suggest association between cytosine methylation and karyotype evolution

23 August 2017

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The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-Myc promoter: implications for drug targeting and control of gene expression

23 August 2017

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23 August 2017

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Genome-wide analyses of recombination prone regions predict role of DNA structural motif in recombination

23 August 2017

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The human colon cancer methylome shows similar hypo- and hypermethylation at conserved tissue-specific CpG island shores

23 August 2017

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Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers

23 August 2017

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Comprehensive genomic characterization defines human glioblastoma genes and core pathways

23 August 2017

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An integrated genomic analysis of human glioblastoma multiforme

23 August 2017

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In vitro analysis of integrated global high-resolution DNA methylation profiling with genomic imbalance and gene expression in osteosarcoma

23 August 2017

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Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines

23 August 2017

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Mechanisms of transcription factor deregulation in lymphoid cell transformation

23 August 2017

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23 August 2017

Chromosome fragile sites

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Z-DNA-forming sequences generate large-scale deletions in mammalian cells

23 August 2017

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The epigenetic progenitor origin of human cancer

23 August 2017

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Prevalence of quadruplexes in the human genome

23 August 2017

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Naturally occurring H-DNA-forming sequences are mutagenic in mammalian cells

23 August 2017

1 reference

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A census of human cancer genes

23 August 2017

1 reference

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The effect of cytosine methylation on the structure and geometry of the Holliday junction: the structure of d(CCGGTACm5CGG) at 1.5 A resolution

23 August 2017

1 reference

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23 August 2017

The Hallmarks of Cancer

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A tetrameric DNA structure with protonated cytosine.cytosine base pairs

23 August 2017

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Effects of methylation on a synthetic polynucleotide: the B--Z transition in poly(dG-m5dC).poly(dG-m5dC).

23 August 2017

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Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis

23 August 2017

1 reference

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Monovalent cation-induced structure of telomeric DNA: the G-quartet model

23 August 2017

1 reference

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Epigenetic instability due to defective replication of structured DNA.

23 August 2017

1 reference

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Epigenetics of a tandem DNA repeat: chromatin DNaseI sensitivity and opposite methylation changes in cancers

14 September 2017

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Defective telomere lagging strand synthesis in cells lacking WRN helicase activity.

14 September 2017

1 reference

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Relationship between nucleosome positioning and DNA methylation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3963273

G-quadruplexes in promoters throughout the human genome

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3963273

Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3963273

Guanine quadruplex DNA structure restricts methylation of CpG dinucleotides genome-wide.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3963273

A novel G-quadruplex motif modulates promoter activity of human thymidine kinase 1.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3963273

Stable G-quadruplexes are found outside nucleosome-bound regions.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3963273

Effect of O6-methylguanine on the stability of G-quadruplex DNA.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3963273

Dynamic roles for G4 DNA in the biology of eukaryotic cells

1 September 2018

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Mutagenic Capacity of Endogenous G4 DNA Underlies Genome Instability in FANCJ-Defective C. elegans

31 March 2020

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Isolation of deletion alleles by G4 DNA-induced mutagenesis

31 March 2020

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In vitro recombination mediated by G-quadruplexes

31 March 2020

1 reference

Chromosomal Instability and Tumors Promoted by DNA Hypomethylation

31 March 2020

1 reference

Genome-wide analysis predicts DNA structural motifs as nucleosome exclusion signals

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB.2089

1 reference

PMCID

3963273

Dimensions Publication ID

21 August 2017

0 references

1 reference

21 August 2017

1 reference

PMCID

3963273