Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network (Q37658088)

21 August 2017

Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network (English)

1 reference

21 August 2017

1 reference

Salmonella enteritidis

1 reference

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Nicholas J. Loman

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Simon Le Hello

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Joël Mossong

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Paul Cleary

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

16

Peter Hawkey

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

author name string

Tim Dallman

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Philip Ashton

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Carol Chatt

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Ute Messelhaeusser

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Wolfgang Rabsch

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Sandra Simon

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Sergejs Nikisins

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Helen Bernard

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Nathalie Jourdan da-Silva

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Christian Kornschober

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Elizabeth de Pinna

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Kathie Grant

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

Thibaut Jombart

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

publication date

25 August 2016

1 reference

21 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

volume

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

page(s)

e000070

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

Whole Genome Sequence Analysis of Salmonella Enteritidis PT4 Outbreaks from a National Reference Laboratory's Viewpoint.

3 June 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5320589

Characterization of Foodborne Outbreaks of Salmonella enterica Serovar Enteritidis with Whole-Genome Sequencing Single Nucleotide Polymorphism-Based Analysis for Surveillance and Outbreak Detection

23 August 2017

1 reference

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Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella

23 August 2017

1 reference

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Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study

23 August 2017

1 reference

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Whole-genome sequencing for national surveillance of Shiga toxin-producing Escherichia coli O157.

23 August 2017

1 reference

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Public Health Investigation of Two Outbreaks of Shiga Toxin-Producing Escherichia coli O157 Associated with Consumption of Watercress

23 August 2017

1 reference

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Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

23 August 2017

1 reference

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Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages

23 August 2017

1 reference

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Rapid whole-genome sequencing for surveillance of Salmonella enterica serovar enteritidis

23 August 2017

1 reference

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Salmonella enterica serovar Enteritidis, England and Wales, 1945-2011

23 August 2017

1 reference

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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

23 August 2017

1 reference

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Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm

23 August 2017

1 reference

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Diverse sources of C. difficile infection identified on whole-genome sequencing

23 August 2017

1 reference

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On the evolutionary history, population genetics and diversity among isolates of Salmonella Enteritidis PFGE pattern JEGX01.0004.

23 August 2017

1 reference

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Emergence and global spread of epidemic healthcare-associated Clostridium difficile

23 August 2017

1 reference

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Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study.

23 August 2017

1 reference

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Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

23 August 2017

1 reference

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Bayesian phylogenetics with BEAUti and the BEAST 1.7

23 August 2017

1 reference

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The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

23 August 2017

1 reference

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Fast and accurate long-read alignment with Burrows-Wheeler transform

23 August 2017

1 reference

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The detection of disease clustering and a generalized regression approach

23 August 2017

1 reference

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Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study

23 August 2017

1 reference

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A multi-country Salmonella Enteritidis phage type 14b outbreak associated with eggs from a German producer: 'near real-time' application of whole genome sequencing and food chain investigations, United Kingdom, May to September 2014.

28 September 2017

1 reference

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adephylo: new tools for investigating the phylogenetic signal in biological traits

28 September 2017

1 reference

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Controlling Salmonella along the food chain in the European Union - progress over the last ten years.

25 June 2018

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National outbreaks of Salmonella infection in the UK, 2000-2011.

1 September 2018

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Evaluation of the impact on human salmonellosis of control measures targeted to Salmonella Enteritidis and Typhimurium in poultry breeding using time-series analysis and intervention models in France.

1 September 2018

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Applying phylogenomics to understand the emergence of Shiga-toxin-producing Escherichia coli O157:H7 strains causing severe human disease in the UK.

1 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28348865

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1099/MGEN.0.000070

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28348865%20AND%20SRC:MED&resulttype=core&format=json

3 June 2020

PubMed publication ID

28348865

1 reference