BreastMark: an integrated approach to mining publicly available transcriptomic datasets relating to breast cancer outcome (Q37689788)

22 August 2017

BreastMark: an integrated approach to mining publicly available transcriptomic datasets relating to breast cancer outcome (English)

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22 August 2017

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5

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Colin Clarke

2

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William M Gallagher

8

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Stephen F Madden

object named as

Stephen F Madden

1

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author name string

Patricia Gaule

3

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22 August 2017

Sinead T Aherne

4

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22 August 2017

Martin Clynes

6

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22 August 2017

John Crown

7

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22 August 2017

1 January 2013

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22 August 2017

Breast Cancer Research

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22 August 2017

15

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22 August 2017

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22 August 2017

R52

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describes a project that uses

22 August 2017

limma

object named as

limma

2 references

22 June 2022

https://europepmc.org/article/PMC/3978487

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

affy

object named as

affy

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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23 August 2017

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23 August 2017

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23 August 2017

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23 August 2017

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23 August 2017

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23 August 2017

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Imatinib mesylate (Gleevec) in advanced breast cancer-expressing C-Kit or PDGFR-beta: clinical activity and biological correlations

23 August 2017

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Predicting prognosis using molecular profiling in estrogen receptor-positive breast cancer treated with tamoxifen

23 August 2017

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A gene expression signature that can predict the recurrence of tamoxifen-treated primary breast cancer

23 August 2017

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Age-specific differences in oncogenic pathway deregulation seen in human breast tumors

23 August 2017

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Altered MicroRNA expression confined to specific epithelial cell subpopulations in breast cancer

23 August 2017

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MicroRNA expression profiling of human breast cancer identifies new markers of tumor subtype

23 August 2017

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23 August 2017

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23 August 2017

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The molecular portraits of breast tumors are conserved across microarray platforms

23 August 2017

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Gene expression profiling spares early breast cancer patients from adjuvant therapy: derived and validated in two population-based cohorts

23 August 2017

1 reference

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Oncogenic pathway signatures in human cancers as a guide to targeted therapies

23 August 2017

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An expression signature for p53 status in human breast cancer predicts mutation status, transcriptional effects, and patient survival

23 August 2017

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23 August 2017

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23 August 2017

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Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer

23 August 2017

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Microarray profiling of microRNAs reveals frequent coexpression with neighboring miRNAs and host genes

23 August 2017

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Robustness, scalability, and integration of a wound-response gene expression signature in predicting breast cancer survival

23 August 2017

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23 August 2017

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A multigene assay to predict recurrence of tamoxifen-treated, node-negative breast cancer

23 August 2017

1 reference

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23 August 2017

Targeted cancer therapy

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23 August 2017

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Expression profiling of mammalian microRNAs uncovers a subset of brain-expressed microRNAs with possible roles in murine and human neuronal differentiation

23 August 2017

1 reference

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Exploration, normalization, and summaries of high density oligonucleotide array probe level data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Repeated observation of breast tumor subtypes in independent gene expression data sets

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Endocrine-responsive breast cancer and strategies for combating resistance

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Gene expression profiling predicts clinical outcome of breast cancer

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Receptor tyrosine kinase signalling as a target for cancer intervention strategies

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

The protein tyrosine kinase family of the human genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Molecular portraits of human breast tumours

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Gene expression profiling in breast cancer: classification, prognostication, and prediction

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Receptor tyrosine kinases: from biology to pathology

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Is gene array testing to be considered routine now?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

A gene expression signature identifies two prognostic subgroups of basal breast cancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Is the Oncotype DX assay necessary in strongly estrogen receptor-positive breast cancers?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

A genomic predictor of response and survival following taxane-anthracycline chemotherapy for invasive breast cancer.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Glucocorticoid-regulated microRNAs and mirtrons in acute lymphoblastic leukemia.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Effects of infiltrating lymphocytes and estrogen receptor on gene expression and prognosis in breast cancer

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Comparison of gene expression profiles predicting progression in breast cancer patients treated with tamoxifen

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

A two-gene expression ratio predicts clinical outcome in breast cancer patients treated with tamoxifen

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Correlating transcriptional networks to breast cancer survival: a large-scale coexpression analysis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

bc-GenExMiner: an easy-to-use online platform for gene prognostic analyses in breast cancer

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

The 76-gene signature defines high-risk patients that benefit from adjuvant tamoxifen therapy.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

microRNA-Associated Progression Pathways and Potential Therapeutic Targets Identified by Integrated mRNA and microRNA Expression Profiling in Breast Cancer

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3978487

The humoral immune system has a key prognostic impact in node-negative breast cancer

3 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23820017

12 December 2020

inferred from PubMed ID database lookup

Routine pathologic parameters can predict Oncotype DX recurrence scores in subsets of ER positive patients: who does not always need testing?

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23820017

12 December 2020

inferred from PubMed ID database lookup

Imatinib mesylate for targeting the platelet-derived growth factor beta receptor in combination with fluorouracil and leucovorin in patients with refractory pancreatic, bile duct, colorectal, or gastric cancer--a dose-escalation Phase I trial

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23820017

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/BCR3444

1 reference

Dimensions Publication ID

22 August 2017

0 references

1 reference

22 August 2017

PubMed publication ID

23820017

1 reference