Repeat elements and the Arabidopsis DNA methylation landscape (Q37749496)

22 August 2017

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title

Repeat elements and the Arabidopsis DNA methylation landscape (English)

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22 August 2017

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F K Teixeira

1

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22 August 2017

V Colot

series ordinal

2

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22 August 2017

language of work or name

English

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publication date

12 May 2010

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22 August 2017

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22 August 2017

volume

105

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22 August 2017

issue

1

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22 August 2017

page(s)

14-23

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An RNA-dependent RNA polymerase is required for paramutation in maize

22 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Small RNA guides for de novo DNA methylation in mammalian germ cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FHDY.2010.52

Methylation and imprinting: from host defense to gene regulation?

21 January 2018

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https://api.crossref.org/works/10.1038%2FHDY.2010.52

Paternal control of embryonic patterning in Arabidopsis thaliana

21 January 2018

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Parental memories shape seeds.

21 January 2018

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https://api.crossref.org/works/10.1038%2FHDY.2010.52

Reprogramming towards pluripotency requires AID-dependent DNA demethylation

21 January 2018

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https://api.crossref.org/works/10.1038%2FHDY.2010.52

Gene number, noise reduction and biological complexity

21 January 2018

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https://api.crossref.org/works/10.1038%2FHDY.2010.52

Heterochromatic siRNAs and DDM1 independently silence aberrant 5S rDNA transcripts in Arabidopsis

21 January 2018

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https://api.crossref.org/works/10.1038%2FHDY.2010.52

UHRF1 plays a role in maintaining DNA methylation in mammalian cells

21 January 2018

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https://api.crossref.org/works/10.1038%2FHDY.2010.52

Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets.

21 January 2018

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https://api.crossref.org/works/10.1038%2FHDY.2010.52

Role of the DRM and CMT3 methyltransferases in RNA-directed DNA methylation.

21 January 2018

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https://api.crossref.org/works/10.1038%2FHDY.2010.52

Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing

21 January 2018

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https://api.crossref.org/works/10.1038%2FHDY.2010.52

Conserved plant genes with similarity to mammalian de novo DNA methyltransferases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

RNA silencing genes control de novo DNA methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Chromatin conversations: mechanisms and implications of paramutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

DEMETER, a DNA glycosylase domain protein, is required for endosperm gene imprinting and seed viability in arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Eukaryotic DNA methylation as an evolutionary device

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

mediator of paramutation1 is required for establishment and maintenance of paramutation at multiple maize loci.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

H3 lysine 9 methylation is maintained on a transcribed inverted repeat by combined action of SUVH6 and SUVH4 methyltransferases

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Extensive demethylation of repetitive elements during seed development underlies gene imprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

DEMETER DNA glycosylase establishes MEDEA polycomb gene self-imprinting by allele-specific demethylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

DNA demethylation by DNA repair

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

EUKARYOTIC CYTOSINE METHYLTRANSFERASES

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Heterochromatin revisited

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Epigenetic inheritance in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Tandem repeats upstream of the Arabidopsis endogene SDC recruit non-CG DNA methylation and initiate siRNA spreading.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Genome-wide demethylation of Arabidopsis endosperm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

RNA-directed DNA methylation mediated by DRD1 and Pol IVb: a versatile pathway for transcriptional gene silencing in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Ectopic hypermethylation of flower-specific genes in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Maintenance of genomic methylation requires a SWI2/SNF2-like protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Assessing the impact of transgenerational epigenetic variation on complex traits

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

The SRA methyl-cytosine-binding domain links DNA and histone methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Telomeric trans-silencing: an epigenetic repression combining RNA silencing and heterochromatin formation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Genetic characterization of late-flowering traits induced by DNA hypomethylation mutation in Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Atypical RNA polymerase subunits required for RNA-directed DNA methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Genome-wide profiling and analysis of Arabidopsis siRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

RNAi, heterochromatin and the cell cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Plant-specific multisubunit RNA polymerase in gene silencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Establishing, maintaining and modifying DNA methylation patterns in plants and animals

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Role of transposable elements in heterochromatin and epigenetic control

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Tissue- and expression level-specific chromatin looping at maize b1 epialleles.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Small RNAs as guardians of the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Transgenerational stability of the Arabidopsis epigenome is coordinated by CG methylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Genetic analysis of RNA-mediated transcriptional gene silencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

DEMETER and REPRESSOR OF SILENCING 1 encode 5-methylcytosine DNA glycosylases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

LSH cooperates with DNA methyltransferases to repress transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Mammalian cytosine methylation at a glance.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Genetic interactions between DNA demethylation and methylation in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

DNA demethylation in the Arabidopsis genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Genome-wide erasure of DNA methylation in mouse primordial germ cells is affected by AID deficiency.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

The Role of DNA Methylation in Invertebrates: Developmental Regulation or Genome Defense?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Stability and flexibility of epigenetic gene regulation in mammalian development

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Inherited epigenetic variation--revisiting soft inheritance

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

X inactivation, differentiation, and DNA methylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Chromatin indexing in Arabidopsis: an epigenomic tale of tails and more

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Rapid quantification of global DNA methylation by isocratic cation exchange high-performance liquid chromatography.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Induction of RNA-directed DNA methylation upon decondensation of constitutive heterochromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Transposable elements and the epigenetic regulation of the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Differential chromatin structure within a tandem array 100 kb upstream of the maize b1 locus is associated with paramutation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

DNA methylation landscapes: provocative insights from epigenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

A role for RNAi in the selective correction of DNA methylation defects.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Chromatin and siRNA pathways cooperate to maintain DNA methylation of small transposable elements in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Epigenetic natural variation in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

RNA-directed de novo methylation of genomic sequences in plants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Transgenerational epigenetic inheritance in health and disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

RNA polymerase V transcription guides ARGONAUTE4 to chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Three SRA-domain methylcytosine-binding proteins cooperate to maintain global CpG methylation and epigenetic silencing in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

VIM1, a methylcytosine-binding protein required for centromeric heterochromatinization

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Cytosine methylation and the ecology of intragenomic parasites

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Transgenerational epigenetic effects.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Small RNA-directed epigenetic natural variation in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Role of RNA polymerase IV in plant small RNA metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Genome-wide high-resolution mapping and functional analysis of DNA methylation in arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

ROS3 is an RNA-binding protein required for DNA demethylation in Arabidopsis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Active DNA demethylation mediated by DNA glycosylases

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

7 January 2021

Paramutation in maize: RNA mediated trans-generational gene silencing

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

7 January 2021

Eukaryotic DNA methylation as an evolutionary device

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

7 January 2021

Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

7 January 2021

Paramutation and development

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

7 January 2021

Chemistry. How are alkynes scrambled?

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

7 January 2021

Mechanisms and evolution of genomic imprinting in plants

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

7 January 2021

Transposons, DNA methylation and gene control

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

7 January 2021

siRNAs and DNA methylation: seedy epigenetics

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

7 January 2021

Arabidopsis thaliana DNA methylation mutants

1 reference

https://api.crossref.org/works/10.1038%2FHDY.2010.52

7 January 2021

Identifiers

DOI

10.1038/HDY.2010.52

1 reference

22 August 2017

1 reference