Examining the relationship between RNA function and motion using nuclear magnetic resonance (Q37969711)

26 August 2017

title

Examining the relationship between RNA function and motion using nuclear magnetic resonance (English)

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26 August 2017

Michael F Bardaro

1

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26 August 2017

Gabriele Varani

series ordinal

2

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26 August 2017

publication date

17 August 2011

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Wiley interdisciplinary reviews. RNA

26 August 2017

published in

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26 August 2017

volume

3

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26 August 2017

issue

1

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26 August 2017

page(s)

122-132

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RNA dynamics: it is about time.

26 August 2017

cites work

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Dynamics-based amplification of RNA function and its characterization by using NMR spectroscopy

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The centrality of RNA.

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Current topics in RNA-protein recognition: control of specificity and biological function through induced fit and conformational capture

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Resolving the motional modes that code for RNA adaptation

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How binding of small molecule and peptide ligands to HIV-1 TAR alters the RNA motional landscape

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13C NMR relaxation studies of RNA base and ribose nuclei reveal a complex pattern of motions in the RNA binding site for human U1A protein

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NMR studies of dynamics in RNA and DNA by 13C relaxation

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13C relaxation studies of the DNA target sequence for hhai methyltransferase reveal unique motional properties

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Base flexibility in HIV-2 TAR RNA mapped by solution (15)N, (13)C NMR relaxation

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Nmr probes of molecular dynamics: overview and comparison with other techniques

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Direct observation of the temperature-induced melting process of the Salmonella fourU RNA thermometer at base-pair resolution

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Relaxation dispersion NMR spectroscopy as a tool for detailed studies of protein folding

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Extensive backbone dynamics in the GCAA RNA tetraloop analyzed using 13C NMR spin relaxation and specific isotope labeling

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Transient Hoogsteen base pairs in canonical duplex DNA.

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Dynamics of large elongated RNA by NMR carbon relaxation.

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Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings

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Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg2+-induced conformational stabilization

21 January 2018

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NMR studies of RNA dynamics and structural plasticity using NMR residual dipolar couplings.

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Intermediate rate atomic trajectories of RNA by solid-state NMR spectroscopy

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Solid-state deuterium NMR studies reveal micros-ns motions in the HIV-1 transactivation response RNA recognition site.

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Hydration dependent dynamics in RNA.

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Principles and features of single-scan two-dimensional NMR spectroscopy.

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The acquisition of multidimensional NMR spectra within a single scan

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Real-time monitoring of chemical transformations by ultrafast 2D NMR spectroscopy

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Themes in RNA-protein recognition.

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Induced fit in RNA-protein recognition

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RNA sensors and riboswitches: self-regulating messages

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Gene regulation by riboswitches

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Dynamics in the U6 RNA intramolecular stem-loop: a base flipping conformational change

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Structural basis of the RNA-binding specificity of human U1A protein

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Shape-specific recognition in the structure of the Vts1p SAM domain with RNA.

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RNA recognition by the Vts1p SAM domain

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iRED analysis of TAR RNA reveals motional coupling, long-range correlations, and a dynamical hinge

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Characterizing complex dynamics in the transactivation response element apical loop and motional correlations with the bulge by NMR, molecular dynamics, and mutagenesis

21 January 2018

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Topology links RNA secondary structure with global conformation, dynamics, and adaptation

21 January 2018

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Structure of the intact stem and bulge of HIV-1 Psi-RNA stem-loop SL1

21 January 2018

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Mg2+-induced variations in the conformation and dynamics of HIV-1 TAR RNA probed using NMR residual dipolar couplings

21 January 2018

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Identification of slow correlated motions in proteins using residual dipolar and hydrogen-bond scalar couplings.

21 January 2018

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Protein backbone dynamics from N-HN dipolar couplings in partially aligned systems: a comparison of motional models in the presence of structural noise

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Anisotropic small amplitude Peptide plane dynamics in proteins from residual dipolar couplings

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Comparison of alignment tensors generated for native tRNA(Val) using magnetic fields and liquid crystalline media.

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Residual dipolar couplings: are multiple independent alignments always possible?

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The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein

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Evidence that electrostatic interactions dictate the ligand-induced arrest of RNA global flexibility

21 January 2018

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A Small-Molecule Probe Induces a Conformation in HIV TAR RNA Capable of Binding Drug-Like Fragments

21 January 2018

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Time-resolved NMR methods resolving ligand-induced RNA folding at atomic resolution

21 January 2018

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Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain

21 January 2018

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Direct observation of hierarchical folding in single riboswitch aptamers

21 January 2018

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The kinetics of ligand binding by an adenine-sensing riboswitch

21 January 2018

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Using NMR chemical shifts as structural restraints in molecular dynamics simulations of proteins

21 January 2018

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A Thorough Dynamic Interpretation of Residual Dipolar Couplings in Ubiquitin

21 January 2018

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UltraSOFAST HMQC NMR and the Repetitive Acquisition of 2D Protein Spectra at Hz Rates

21 January 2018

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High-Resolution Studies of Uniformly 13C,15N-Labeled RNA by Solid-State NMR Spectroscopy

21 January 2018

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The Speed of RNA Transcription and Metabolite Binding Kinetics Operate an FMN Riboswitch

21 January 2018

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Visualizing spatially correlated dynamics that directs RNA conformational transitions

21 January 2018

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21 January 2018

Identifiers

DOI

10.1002/WRNA.108

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release_4qxiidbpu5e2xi47ix6b7jb3fy

26 August 2017

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/4qxiidbpu5e2xi47ix6b7jb3fy

mapped directly with Wikidata item

24 November 2022

based on heuristic

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