The layout of a bacterial genome (Q38000851)

26 August 2017

The layout of a bacterial genome (English)

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26 August 2017

François Képès

1

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26 August 2017

Brian C Jester

2

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26 August 2017

Thibaut Lepage

3

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26 August 2017

Nafiseh Rafiei

4

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26 August 2017

Bianca Rosu

5

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26 August 2017

Ivan Junier

6

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26 August 2017

language of work or name

English

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publication date

31 March 2012

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26 August 2017

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26 August 2017

586

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26 August 2017

15

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26 August 2017

2043-2048

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Detection and possible role of two large nondivisible zones on the Escherichia coli chromosome

26 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Spatial arrangement and macrodomain organization of bacterial chromosomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Co-orientation of replication and transcription preserves genome integrity

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Emergent properties of reduced-genome Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Creation of a bacterial cell controlled by a chemically synthesized genome

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

The ten grand challenges of synthetic life

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Genetic design automation: engineering fantasy or scientific renewal?

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Termination structures in the Escherichia coli chromosome replication fork trap

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Identification of replication origins in prokaryotic genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Interruptions in gene expression drive highly expressed operons to the leading strand of DNA replication

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Essentiality, not expressiveness, drives gene-strand bias in bacteria.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Growth-rate-dependent regulation of ribosome synthesis in E. coli: expression of the lacZ and galK genes fused to ribosomal promoters.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Chromosome replication and the division cycle of Escherichia coli B/r.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Consequences of replication fork movement through transcription units in vivo

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

The replisome uses mRNA as a primer after colliding with RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Replisome structure and conformational dynamics underlie fork progression past obstacles

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

The organization of the bacterial genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Head-on collision between a DNA replication apparatus and RNA polymerase transcription complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Resolution of head-on collisions between the transcription machinery and bacteriophage phi29 DNA polymerase is dependent on RNA polymerase translocation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Genometric analyses of the organization of circular chromosomes: a universal pressure determines the direction of ribosomal RNA genes transcription relative to chromosome replication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Transcription/replication collisions cause bacterial transcription units to be longer on the leading strand of replication.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Comparative genomics and the evolution of prokaryotes.

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Codon catalog usage and the genome hypothesis

21 January 2018

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https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Proteome composition and codon usage in spirochaetes: species-specific and DNA strand-specific mutational biases

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Codon usage and lateral gene transfer in Bacillus subtilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Codon adaptation index as a measure of dominating codon bias.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Translation is a non-uniform process. Effect of tRNA availability on the rate of elongation of nascent polypeptide chains

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

A general model of codon bias due to GC mutational bias

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

21 January 2018

Selection on Codon Bias

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Codon bias signatures, organization of microorganisms in codon space, and lifestyle

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Bacterial persistence as a phenotypic switch

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Noise in gene expression: origins, consequences, and control

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Impact of gene expression noise on organismal fitness and the efficacy of natural selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Network motifs: theory and experimental approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Network motifs in the transcriptional regulation network of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Evolution of chromosome organization driven by selection for reduced gene expression noise

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

DNA looping and physical constraints on transcription regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

The structure and function of the bacterial chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

DNA supercoiling - a global transcriptional regulator for enterobacterial growth?

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Organization of supercoil domains and their reorganization by transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Genomic organization of evolutionarily correlated genes in bacteria: limits and strategies

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Periodic transcriptional organization of the E.coli genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Periodic epi-organization of the yeast genome revealed by the distribution of promoter sites.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

A haploid-specific transcriptional response to irradiation in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Chromosomal periodicity of evolutionarily conserved gene pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Chromosomal periodicity and positional networks of genes in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Spatial and topological organization of DNA chains induced by gene co-localization

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

High local protein concentrations at promoters: strategies in prokaryotic and eukaryotic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Nuclear organization of the genome and the potential for gene regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

The origin of protein interactions and allostery in colocalization

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Autocatalytic gene expression occurs via transertion and membrane domain formation and underlies differentiation in bacteria: a model.

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Periodic pattern detection in sparse boolean sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Genomics of the marA/soxS/rob regulon of Escherichia coli: identification of directly activated promoters by application of molecular genetics and informatics to microarray data

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

21 January 2018

The language of genes

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

A syntactic model to design and verify synthetic genetic constructs derived from standard biological parts

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Modeling structure-function relationships in synthetic DNA sequences using attribute grammars

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

Replication-associated gene dosage effects shape the genomes of fast-growing bacteria but only for transcription and translation genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1016%2FJ.FEBSLET.2012.03.051

10.1016/J.FEBSLET.2012.03.051

21 January 2018

Identifiers

DOI

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26 August 2017

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