DNA supercoiling - a global transcriptional regulator for enterobacterial growth? (Q36026801)

11 August 2017

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title

DNA supercoiling - a global transcriptional regulator for enterobacterial growth? (English)

1 reference

11 August 2017

Andrew Travers

1

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PubMed ID

15685225

11 August 2017

Georgi Muskhelishvili

series ordinal

2

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PubMed ID

15685225

11 August 2017

language of work or name

English

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publication date

1 February 2005

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Nature Reviews Microbiology

11 August 2017

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11 August 2017

3

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11 August 2017

2

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11 August 2017

157-169

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https://scigraph.springernature.com/pub.10.1038/nrmicro1088

11 August 2017

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cites work

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FIS modulates the kinetics of successive interactions of RNA polymerase with the core and upstream regions of the tyrT promoter

21 January 2018

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Topological unwinding of strong and weak promoters by RNA polymerase. A comparison between the lac wild-type and the UV5 sites of Escherichia coli

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Wrapping of DNA around the E.coli RNA polymerase open promoter complex

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DNA supercoiling and transcription in Escherichia coli: influence of RNA polymerase mutations

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The supercoiling sensitivity of a bacterial tRNA promoter parallels its responsiveness to stringent control

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Mechanism of transcriptional activation by FIS: role of core promoter structure and DNA topology.

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Requirement for an upstream element for optimal transcription of a bacterial tRNA gene

21 January 2018

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The G+C-rich discriminator region of the tyrT promoter antagonises the formation of stable preinitiation complexes

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Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli

21 January 2018

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RNase HI overproduction is required for efficient full-length RNA synthesis in the absence of topoisomerase I in Escherichia coli.

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Effect of varying the supercoiling of DNA on transcription and its regulation.

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Transcription during productive infection with polyoma virus and simian virus 40

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Modulation of RNA polymerase specificity by ppGpp

21 January 2018

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Genetic studies on the beta subunit of Escherichia coli RNA polymerase. VII. RNA polymerase is a target for ppGpp.

21 January 2018

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Genetically separable functional elements mediate the optimal expression and stringent regulation of a bacterial tRNA gene.

21 January 2018

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The transition between different physiological states during balanced growth of Salmonella typhimurium.

21 January 2018

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Alteration of the growth-rate-dependent regulation of Escherichia coli tyrT expression by promoter mutations.

21 January 2018

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Architecture of Fis-activated transcription complexes at the Escherichia coli rrnB P1 and rrnE P1 promoters

21 January 2018

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FIS activates sequential steps during transcription initiation at a stable RNA promoter

21 January 2018

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Phosphorylation of histone H3 is functionally linked to retinoic acid receptor beta promoter activation

21 January 2018

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Buffering of stable RNA promoter activity against DNA relaxation requires a far upstream sequence.

21 January 2018

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Promoter unwinding and promoter clearance by RNA polymerase: detection by single-molecule DNA nanomanipulation.

21 January 2018

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Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro

21 January 2018

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DNA microloops and microdomains: a general mechanism for transcription activation by torsional transmission.

21 January 2018

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Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism

21 January 2018

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DNA topology-mediated control of global gene expression in Escherichia coli

21 January 2018

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Transcription regulation by initiating NTP concentration: rRNA synthesis in bacteria.

21 January 2018

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Changes in Escherichia coli rRNA Promoter Activity Correlate with Changes in Initiating Nucleoside Triphosphate and Guanosine 5′ Diphosphate 3′-Diphosphate Concentrations after Induction of Feedback Control of Ribosome Synthesis

21 January 2018

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The rpoB mutants destabilizing initiation complexes at stringently controlled promoters behave like "stringent" RNA polymerases in Escherichia coli

21 January 2018

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Regulation of rRNA transcription is remarkably robust: FIS compensates for altered nucleoside triphosphate sensing by mutant RNA polymerases at Escherichia coli rrn P1 promoters

21 January 2018

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Fis stabilizes the interaction between RNA polymerase and the ribosomal promoter rrnB P1, leading to transcriptional activation.

21 January 2018

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Phage T4 infection restricts rRNA synthesis by E. coli RNA polymerase

21 January 2018

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Extensive regulation compromises the extent to which DNA gyrase controls DNA supercoiling and growth rate ofEscherichia coli

21 January 2018

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A molecular mechanism for the repression of transcription by the H-NS protein

21 January 2018

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Structure of the histone-like protein H-NS and its role in regulation and genome superstructure

21 January 2018

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Flexible DNA bending in HU-DNA cocrystal structures

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

The histone-like protein HU does not obstruct movement of T7 RNA polymerase in Escherichia coli cells but stimulates its activity

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

Interaction of Fis protein with DNA: bending and specificity of binding.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

Regulation of HU alpha and HU beta by CRP and FIS in Escherichia coli.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

Regulation of gene expression by histone-like proteins in bacteria.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

Antagonistic involvement of FIS and H-NS proteins in the transcriptional control of hns expression.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

Cross-talk between topoisomerase I and HU in Escherichia coli.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

Stringent spacing requirements for transcription activation by CRP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Functional modulation of Escherichia coli RNA polymerase

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Survival of hunger and stress: the role of rpoS in early stationary phase gene regulation in E. coli

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

Promoter selectivity of Escherichia coli RNA polymerase E sigma 70 and E sigma 38 holoenzymes. Effect of DNA supercoiling.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

Bacterial RNA polymerase subunit and eukaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

Control of rRNA expression by small molecules is dynamic and nonredundant

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

DNA axial rotation and the merge of oppositely supercoiled DNA domains in Escherichia coli: effects of DNA bends

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

Transcription-induced barriers to supercoil diffusion in the Salmonella typhimurium chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Regulation of sigma factor competition by the alarmone ppGpp

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Thermoregulation of Shigella and Escherichia coli EIEC pathogenicity. A temperature-dependent structural transition of DNA modulates accessibility of virF promoter to transcriptional repressor H-NS.

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

Cation transport in Escherichia coli. I. Intracellular Na and K concentrations and net cation movement

21 January 2018

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https://api.crossref.org/works/10.1038%2FNRMICRO1088

CATION TRANSPORT IN ESCHERICHIA COLI. IV. KINETICS OF NET K UPTAKE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

NTP-sensing by rRNA promoters in Escherichia coli is direct

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

DksA affects ppGpp induction of RpoS at a translational level

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Role of ppGpp in rpoS stationary-phase regulation in Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Topological domain structure of the Escherichia coli chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Macrodomain organization of the Escherichia coli chromosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Spatial patterns of transcriptional activity in the chromosome of Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Bacillus subtilis functional genomics: global characterization of the stringent response by proteome and transcriptome analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Regulation through the Secondary Channel—Structural Framework for ppGpp-DksA Synergism during Transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

The regulation of bacterial transcription initiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

RNA polymerase unwinds an 11-base pair segment of a phage T7 promoter

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Estimation of the effect of coumermycin A1 on Salmonella typhimurium promoters by using random operon fusions

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

DNA supercoiling and the anaerobic and growth phase regulation of tonB gene expression.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Regulation of the Escherichia coli nrd operon: role of DNA supercoiling

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Influence of DNA topology on expression of the tdc operon in Escherichia coli K-12

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Activation of the lac promoter and its variants. Synergistic effects of catabolite activator protein and supercoiling in vitro

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

All three elements of the lac ps promoter mediate its transcriptional response to DNA supercoiling

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Escherichia coli tyrT gene transcription is sensitive to DNA supercoiling in its native chromosomal context: effect of DNA topoisomerase IV overexpression on tyrT promoter function

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Regulation of the synthesis of ribosomes and ribosomal components

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

DNA determinants of rRNA synthesis in E. coli: growth rate dependent regulation, feedback inhibition, upstream activation, antitermination

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Superhelical torsion in cellular DNA responds directly to environmental and genetic factors

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

A genetic locus for the regulation of ribonucleic acid synthesis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Two Compounds implicated in the Function of the RC Gene of Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

The mechanism of action of ppGpp on rRNA synthesis in vitro

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Stringent control and growth-rate-dependent control have nonidentical promoter sequence requirements

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

The Fis protein: it's not just for DNA inversion anymore

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Promoter protection by a transcription factor acting as a local topological homeostat

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

E. coli RNA polymerase-rRNA promoter interaction and the effect of ppGpp

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Guanosine 3',5'-bis(diphosphate) (ppGpp)-dependent inhibition of transcription from stringently controlled Escherichia coli promoters can be explained by an altered initiation pathway that traps RNA polymerase

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Mutations that render the promoter of the histidine operon of Salmonella typhimurium insensitive to nutrient-rich medium repression and amino acid downshift

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Invariance of the nucleoside triphosphate pools of Escherichia coli with growth rate

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Relationship between growth rate and ATP concentration in Escherichia coli: a bioassay for available cellular ATP.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Guanosine 3'-diphosphate 5'-diphosphate is not required for growth rate-dependent control of rRNA synthesis in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Torsional tension in intracellular bacteriophage T4 DNA. Evidence that a linear DNA duplex can be supercoiled in vivo

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Topoisomerization of plasmid DNA in Escherichia coli infected with bacteriophage T4.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

DNA supercoiling contributes to disconnect sigmaS accumulation from sigmaS-dependent transcription in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Energy buffering of DNA structure fails when Escherichia coli runs out of substrate

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

DNA topology and adaptation of Salmonella typhimurium to an intracellular environment.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

H-NS: a universal regulator for a dynamic genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

An architectural role of the Escherichia coli chromatin protein FIS in organising DNA.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

FIS-dependent trans activation of stable RNA operons of Escherichia coli under various growth conditions

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Regulation of crp transcription by oscillation between distinct nucleoprotein complexes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

CRP modulates fis transcription by alternate formation of activating and repressing nucleoprotein complexes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Escherichia coli response to hydrogen peroxide: a role for DNA supercoiling, topoisomerase I and Fis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Cyclic AMP receptor protein positively controls gyrA transcription and alters DNA topology after nutritional upshift in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Nucleoid proteins stimulate stringently controlled bacterial promoters: a link between the cAMP-CRP and the (p)ppGpp regulons in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Lrp, a major regulatory protein in Escherichia coli, bends DNA and can organize the assembly of a higher-order nucleoprotein structure.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Contribution of DNA conformation and topology in right-handed DNA wrapping by the Bacillus subtilis LrpC protein

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Dramatic changes in Fis levels upon nutrient upshift in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Variation in HU composition during growth of Escherichia coli: the heterodimer is required for long term survival

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Role of DNA supercoiling and rpoS sigma factor in the osmotic and growth phase-dependent induction of the gene osmE of Escherichia coli K12

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Promoter selectivity of Escherichia coli RNA polymerase: omega factor is responsible for the ppGpp sensitivity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

The omega subunit of Escherichia coli K-12 RNA polymerase is not required for stringent RNA control in vivo

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Supercoiling of the DNA template during transcription

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Involvement of ppGpp, ribosome modulation factor, and stationary phase-specific sigma factor sigma(S) in the decrease in cell viability caused by spermidine

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Polyamines as modulators of gene expression under oxidative stress in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Identification of transcriptional start sites and the role of ppGpp in the expression of rpoS, the structural gene for the sigma S subunit of RNA polymerase in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Synthesis of the stationary-phase sigma factor sigma s is positively regulated by ppGpp

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Essential steps in the ppGpp-dependent regulation of bacterial ribosomal RNA promoters can be explained by substrate competition

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Transcriptionally driven cruciform formation in vivo

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Transition of a cloned d(AT)n-d(AT)n tract to a cruciform in vivo.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Studies of nucleotide binding to the ribonucleic acid polymerase by a fluorescence technique

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Periodic transcriptional organization of the E.coli genome

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

Angular Alteration of the DNA Helix by E. coli RNA Polymerase

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

7 January 2021

Nucleic acid metabolism in relation to the lysogenic phenomenon

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

7 January 2021

Structural basis for transcription regulation by alarmone ppGpp.

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

7 January 2021

Control of rRNA and tRNA syntheses in Escherichia coli by guanosine tetraphosphate

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

7 January 2021

Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO1088

7 January 2021

Identifiers

DOI

10.1038/NRMICRO1088

1 reference

11 August 2017

1 reference

PubMed ID

15685225