Resolving protein interactions and complexes by affinity purification followed by label-based quantitative mass spectrometry (Q38011634)

27 August 2017

Resolving protein interactions and complexes by affinity purification followed by label-based quantitative mass spectrometry (English)

1 reference

27 August 2017

Laura Trinkle-Mulcahy

series ordinal

1

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27 August 2017

1 May 2012

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27 August 2017

1 reference

27 August 2017

12

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27 August 2017

10

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27 August 2017

1623-1638

1 reference

The interactome of a PTB domain-containing adapter protein, Odin, revealed by SILAC

27 August 2017

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

RRP1B targets PP1 to mammalian cell nucleoli and is associated with Pre-60S ribosomal subunits

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Differential proteomics based on 18O labeling to determine the cyclin dependent kinase 9 interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Analysis of the human endogenous coregulator complexome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Functional organization of the yeast proteome by systematic analysis of protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

A genetic engineering solution to the "arginine conversion problem" in stable isotope labeling by amino acids in cell culture (SILAC).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Applicability of tandem affinity purification MudPIT to pathway proteomics in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Analysis of protein complexes using mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Analyzing protein-protein interactions by quantitative mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Mass spectrometry and protein analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Mass spectrometry-based proteomics using Q Exactive, a high-performance benchtop quadrupole Orbitrap mass spectrometer.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

I-DIRT, a general method for distinguishing between specific and nonspecific protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

High confidence determination of specific protein-protein interactions using quantitative mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Quantitative, high-resolution proteomics for data-driven systems biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Mapping multiprotein complexes by affinity purification and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

An optimized protocol for protein purification in cultured mammalian cells using a tandem affinity purification approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Streamlined analysis schema for high-throughput identification of endogenous protein complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Fluorescent proteins as proteomic probes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Repo-Man recruits PP1 gamma to chromatin and is essential for cell viability

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Extracting gene function from protein-protein interactions using Quantitative BAC InteraCtomics (QUBIC).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

A novel proteomic screen for peptide-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Unbiased RNA-protein interaction screen by quantitative proteomics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Quantitative profiling of in vivo-assembled RNA-protein complexes using a novel integrated proteomic approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Proteomic approaches to the analysis of multiprotein signaling complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Software for quantitative proteomic analysis using stable isotope labeling and data independent acquisition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

A guided tour of the Trans-Proteomic Pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Andromeda: a peptide search engine integrated into the MaxQuant environment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Dynamic changes in transcription factor complexes during erythroid differentiation revealed by quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Quantitative proteomic identification of MAZ as a transcriptional regulator of muscle-specific genes in skeletal and cardiac myocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Shotgun proteomics using the iTRAQ isobaric tags

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Quantitative chemical proteomics reveals mechanisms of action of clinical ABL kinase inhibitors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Temporal profiling of the adipocyte proteome during differentiation using a five-plex SILAC based strategy.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Super-SILAC mix for quantitative proteomics of human tumor tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Quantitative proteomics to study mitogen-activated protein kinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Preventing arginine-to-proline conversion in a cell-line-independent manner during cell cultivation under stable isotope labeling by amino acids in cell culture (SILAC) conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Prevention of amino acid conversion in SILAC experiments with embryonic stem cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

A computational approach to correct arginine-to-proline conversion in quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

MSQuant, an open source platform for mass spectrometry-based quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Stable-isotope labeling with amino acids in nematodes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Chromatin affinity purification and quantitative mass spectrometry defining the interactome of histone modification patterns.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Protein interactions of phosphatase and tensin homologue (PTEN) and its cancer-associated G20E mutant compared by using stable isotope labeling by amino acids in cell culture-based parallel affinity purification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Characterization of the human COP9 signalosome complex using affinity purification and mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

The SILAC fly allows for accurate protein quantification in vivo.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Quantitative proteomics by metabolic labeling of model organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Using stable-isotope-labeled proteins for hydrogen exchange studies in complex mixtures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Monitoring of changes in the membrane proteome during stationary phase adaptation of Bacillus subtilis using in vivo labeling techniques

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Temperature-dependent regulation of proteins in Aspergillus flavus: whole organism stable isotope labeling by amino acids

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Large-scale differential proteome analysis in Plasmodium falciparum under drug treatment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Stable isotope labeling of Arabidopsis thaliana cells and quantitative proteomics by mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Extending SILAC to proteomics of plant cell lines

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

SILAC mouse for quantitative proteomics uncovers kindlin-3 as an essential factor for red blood cell function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Proteome dynamics in complex organisms: using stable isotopes to monitor individual protein turnover rates.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Advanced identification of proteins in uncharacterized proteomes by pulsed in vivo stable isotope labeling-based mass spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Establishment of a protein frequency library and its application in the reliable identification of specific protein interaction partners

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Modeling contaminants in AP-MS/MS experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

SAINT: probabilistic scoring of affinity purification-mass spectrometry data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Purification of epitope-tagged transcription factor IID.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

Proteomic identification of ubiquitinated proteins from human cells expressing His-tagged ubiquitin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

The Strep-tag system for one-step purification and high-affinity detection or capturing of proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

An experimental correction for arginine-to-proline conversion artifacts in SILAC-based quantitative proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201100438

21 January 2018

Identifiers

DOI

10.1002/PMIC.201100438

1 reference

27 August 2017

1 reference

PubMed ID

22610586