Multiple layers of complexity in cis-regulatory regions of developmental genes (Q38042890)

27 August 2017

title

Multiple layers of complexity in cis-regulatory regions of developmental genes (English)

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27 August 2017

Nicolás Frankel

1

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27 August 2017

publication date

16 October 2012

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27 August 2017

published in

Developmental Dynamics

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27 August 2017

volume

241

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27 August 2017

issue

12

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27 August 2017

page(s)

1857-1866

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Conserved cis-regulatory modules mediate complex neural expression patterns of the eyeless gene in the Drosophila brain

27 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites

21 January 2018

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GAGA protein: a multi-faceted transcription factor

21 January 2018

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Developmental regulation of chromatin conformation by Hox proteins in Drosophila

21 January 2018

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https://api.crossref.org/works/10.1002%2FDVDY.23871

Unraveling cis-regulatory mechanisms at the abdominal-A and Abdominal-B genes in the Drosophila bithorax complex

21 January 2018

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https://api.crossref.org/works/10.1002%2FDVDY.23871

A novel promoter-tethering element regulates enhancer-driven gene expression at the bithorax complex in the Drosophila embryo

21 January 2018

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https://api.crossref.org/works/10.1002%2FDVDY.23871

Transcriptional enhancers: Intelligent enhanceosomes or flexible billboards?

21 January 2018

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https://api.crossref.org/works/10.1002%2FDVDY.23871

Expression of a β-globin gene is enhanced by remote SV40 DNA sequences

21 January 2018

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https://api.crossref.org/works/10.1002%2FDVDY.23871

Genomic imprinting: a mammalian epigenetic discovery model

21 January 2018

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https://api.crossref.org/works/10.1002%2FDVDY.23871

Shadow enhancers: frequently asked questions about distributed cis-regulatory information and enhancer redundancy

21 January 2018

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https://api.crossref.org/works/10.1002%2FDVDY.23871

Insulators and boundaries: versatile regulatory elements in the eukaryotic genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

CpG island chromatin: a platform for gene regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Polycomb complexes repress developmental regulators in murine embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Sequential ChIP-bisulfite sequencing enables direct genome-scale investigation of chromatin and DNA methylation cross-talk

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Promoter-proximal tethering elements regulate enhancer-promoter specificity in the Drosophila Antennapedia complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Conservation of enhancer location in divergent insects

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Programming of DNA methylation patterns

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Complexity of cis-regulatory organization of six3a during forebrain and eye development in zebrafish

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

CRX ChIP-seq reveals the cis-regulatory architecture of mouse photoreceptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Evolution acts on enhancer organization to fine-tune gradient threshold readouts

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

The function and regulation of Ultrabithorax in the legs of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

CpG islands and the regulation of transcription

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Complex interactions between cis-regulatory modules in native conformation are critical for Drosophila snail expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Coordinate enhancers share common organizational features in the Drosophila genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Molecular integration of wingless, decapentaplegic, and autoregulatory inputs into Distalless during Drosophila leg development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Epigenetic reprogramming in plant and animal development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Convergent evolution of two mammalian neuronal enhancers by sequential exaptation of unrelated retroposons

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Phenotypic robustness conferred by apparently redundant transcriptional enhancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Morphological evolution caused by many subtle-effect substitutions in regulatory DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Improved Mos1-mediated transgenesis in C. elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Electroporation in avian embryos

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Control of Distal-less expression in the Drosophila appendages by functional 3' enhancers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Deletion of a remote enhancer near ATOH7 disrupts retinal neurogenesis, causing NCRNA disease

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Epigenetics and gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Transgenic analysis of Hoxd gene regulation during digit development.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Compaction of chromatin by diverse Polycomb group proteins requires localized regions of high charge

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

CTCF-binding elements mediate control of V(D)J recombination

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Sepsid even-skipped enhancers are functionally conserved in Drosophila despite lack of sequence conservation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Histone modifications at human enhancers reflect global cell-type-specific gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Shadow enhancers as a source of evolutionary novelty

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Canalization of development by microRNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Polycomb-like 3 promotes polycomb repressive complex 2 binding to CpG islands and embryonic stem cell self-renewal

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

A novel CpG island set identifies tissue-specific methylation at developmental gene loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Mammalian polyhomeotic homologues Phc2 and Phc1 act in synergy to mediate polycomb repression of Hox genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Logic functions of the genomic cis-regulatory code

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies long-range ventral forebrain enhancers.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Exchange of GATA factors mediates transitions in looped chromatin organization at a developmentally regulated gene locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Nomadic enhancers: tissue-specific cis-regulatory elements of yellow have divergent genomic positions among Drosophila species

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Spatial and temporal control elements of the Drosophila engrailed gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Analysis of Pax6 expression using a BAC transgene reveals the presence of a paired-less isoform of Pax6 in the eye and olfactory bulb

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Disperse versus compact elements for the regulation of runt stripes in Drosophila.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Pitx2 defines alternate pathways acting through MyoD during limb and somitic myogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Transcriptional "silencer" element in rat repetitive sequences associated with the rat insulin 1 gene locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Mouse transgenesis identifies conserved functional enhancers and cis-regulatory motif in the vertebrate LIM homeobox gene Lhx2 locus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Control of developmental regulators by Polycomb in human embryonic stem cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Transcriptional Enhancers in Animal Development and Evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

A microRNA imparts robustness against environmental fluctuation during development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Comprehensive mapping of long-range interactions reveals folding principles of the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Chromatin insulator and the promoter targeting sequence modulate the timing of long-range enhancer-promoter interactions in the Drosophila embryo

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

The bithorax complex of Drosophila an exceptional Hox cluster

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

DNaseI hypersensitivity and ultraconservation reveal novel, interdependent long-range enhancers at the complex Pax6 cis-regulatory region

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Mapping cis- and trans- chromatin interaction networks using chromosome conformation capture (3C).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

A regulatory archipelago controls Hox genes transcription in digits

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Multiple enhancers located in a 1-Mb region upstream of POU3F4 promote expression during inner ear development and may be required for hearing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

A cis-regulatory map of the Drosophila genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

The regulatory content of intergenic DNA shapes genome architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

DNA methylation regulates long-range gene silencing of an X-linked homeobox gene cluster in a lineage-specific manner

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Transcriptional control and the role of silencers in transcriptional regulation in eukaryotes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Enhancers: emerging roles in cell fate specification

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

An Atomic Model of the Interferon-β Enhanceosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Lens development depends on a pair of highly conserved Sox21 regulatory elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

ovo/svb integrates Wingless and DER pathways to control epidermis differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Shadow enhancers foster robustness of Drosophila gastrulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Non-additive interactions involving two distinct elements mediate sloppy-paired regulation by pair-rule transcription factors

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Histone variant H2A.Z marks the 5' ends of both active and inactive genes in euchromatin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Pericentric heterochromatin becomes enriched with H2A.Z during early mammalian development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Polycomb complexes and epigenetic states

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

A vertebrate Polycomb response element governs segmentation of the posterior hindbrain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

A spatial and temporal map of C. elegans gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Structural rules and complex regulatory circuitry constrain expression of a Notch- and EGFR-regulated eye enhancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Site-specific integrase-mediated transgenesis in mice via pronuclear injection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Activation-dependent intrachromosomal interactions formed by the TNF gene promoter and two distal enhancers

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

The 87A7 chromomere. Identification of novel chromatin structures flanking the heat shock locus that may define the boundaries of higher order domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Transgenesis upgrades for Drosophila melanogaster.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Optimized conditions for transgenesis of the ascidian Ciona using square wave electroporation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Simple and highly efficient BAC recombineering using galK selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Study of FoxA pioneer factor at silent genes reveals Rfx-repressed enhancer at Cdx2 and a potential indicator of esophageal adenocarcinoma development

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Multiple conserved regulatory elements with overlapping functions determine Sox10 expression in mouse embryogenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

Transcription: Shadow enhancers confer robustness

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

7 January 2021

Enhancer decommissioning by LSD1 during embryonic stem cell differentiation

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

7 January 2021

Long range interaction of cis-DNA elements mediated by architectural transcription factor Bach1

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

7 January 2021

Isolation and characterization of embryonic and adult epicardium and epicardium-derived cells

1 reference

https://api.crossref.org/works/10.1002%2FDVDY.23871

7 January 2021

Identifiers

DOI

10.1002/DVDY.23871

1 reference

27 August 2017

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