Biological and bioinformatical approaches to study crosstalk of long-non-coding RNAs and chromatin-modifying proteins. (Q38211290)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24820400%20AND%20SRC:MED&resulttype=core&format=json

18 March 2020

title

Biological and bioinformatical approaches to study crosstalk of long-non-coding RNAs and chromatin-modifying proteins (English)

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18 March 2020

1 reference

1

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18 March 2020

author name string

Tanja Vogel

series ordinal

2

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18 March 2020

publication date

13 May 2014

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18 March 2020

published in

Cell and Tissue Research

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18 March 2020

volume

356

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18 March 2020

issue

3

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18 March 2020

page(s)

507-526

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https://scigraph.springernature.com/pub.10.1007/s00441-014-1885-x

18 March 2020

exact match

0 references

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21 January 2018

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21 January 2018

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Folding RNA/DNA hybrid duplexes

21 January 2018

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Long non-coding RNA H19 increases bladder cancer metastasis by associating with EZH2 and inhibiting E-cadherin expression

21 January 2018

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The metazoan Mediator co-activator complex as an integrative hub for transcriptional regulation

21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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Long noncoding RNA-mediated maintenance of DNA methylation and transcriptional gene silencing.

21 January 2018

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Characterization of the RNA content of chromatin

21 January 2018

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H19 lncRNA controls gene expression of the Imprinted Gene Network by recruiting MBD1.

21 January 2018

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21 January 2018

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The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin

21 January 2018

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Intersection of the RNA interference and X-inactivation pathways

21 January 2018

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HDAC inhibition decreases XIST expression on female IVP bovine blastocysts

21 January 2018

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DNA hypomethylation can activate Xist expression and silence X-linked genes.

21 January 2018

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New families of human regulatory RNA structures identified by comparative analysis of vertebrate genomes

21 January 2018

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CTCF: master weaver of the genome

21 January 2018

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The Trithorax group protein Ash2l and Saf-A are recruited to the inactive X chromosome at the onset of stable X inactivation

21 January 2018

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Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.

21 January 2018

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The long noncoding RNA Six3OS acts in trans to regulate retinal development by modulating Six3 activity

21 January 2018

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Polycomb/Trithorax response elements and epigenetic memory of cell identity

21 January 2018

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Genome regulation by long noncoding RNAs.

21 January 2018

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Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts

21 January 2018

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Methyl-CpG binding protein MBD1 couples histone H3 methylation at lysine 9 by SETDB1 to DNA replication and chromatin assembly

21 January 2018

1 reference

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Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes

21 January 2018

1 reference

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Recruitment of PRC1 function at the initiation of X inactivation independent of PRC2 and silencing

21 January 2018

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Perturbation of chromatin structure globally affects localization and recruitment of splicing factors

21 January 2018

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SELEX--a (r)evolutionary method to generate high-affinity nucleic acid ligands

21 January 2018

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

21 January 2018

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A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization

21 January 2018

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R-loop stabilization represses antisense transcription at the Arabidopsis FLC locus.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Jpx RNA activates Xist by evicting CTCF.

21 January 2018

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https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

21 January 2018

1 reference

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RYBP-PRC1 complexes mediate H2A ubiquitylation at polycomb target sites independently of PRC2 and H3K27me3

21 January 2018

1 reference

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Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays

21 January 2018

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Target prediction for small, noncoding RNAs in bacteria

21 January 2018

1 reference

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Multiple structural alignment and clustering of RNA sequences

21 January 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

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Long noncoding RNA as modular scaffold of histone modification complexes

21 January 2018

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Finding non-coding RNAs through genome-scale clustering.

21 January 2018

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CLIP identifies Nova-regulated RNA networks in the brain

21 January 2018

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Site identification in high-throughput RNA-protein interaction data

21 January 2018

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Differential expression of polycomb repression complex 1 (PRC1) members in the developing mouse brain reveals multiple complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

A novel non-coding RNA lncRNA-JADE connects DNA damage signalling to histone H4 acetylation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Molecular mechanisms of long noncoding RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

N6-methyladenosine-dependent regulation of messenger RNA stability

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Sequence-specific methylation of the mouse H19 gene in embryonic cells deficient in the Dnmt-1 gene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

RNAcode: robust discrimination of coding and noncoding regions in comparative sequence data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Comparative genomics boosts target prediction for bacterial small RNAs

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Fbxl10/Kdm2b recruits polycomb repressive complex 1 to CpG islands and regulates H2A ubiquitylation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Binding interactions between long noncoding RNA HOTAIR and PRC2 proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

NONCODEv4: exploring the world of long non-coding RNA genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Repression of the long noncoding RNA-LET by histone deacetylase 3 contributes to hypoxia-mediated metastasis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Posttranscriptional gene regulation by long noncoding RNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Molecular interplay of the noncoding RNA ANRIL and methylated histone H3 lysine 27 by polycomb CBX7 in transcriptional silencing of INK4a

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

LincRNA-p21 suppresses target mRNA translation

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

PscanChIP: Finding over-represented transcription factor-binding site motifs and their correlations in sequences from ChIP-Seq experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Model-based analysis of ChIP-Seq (MACS)

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Genome-wide identification of polycomb-associated RNAs by RIP-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

Downregulated LncRNA-ANCR promotes osteoblast differentiation by targeting EZH2 and regulating Runx2 expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X

A SWI/SNF chromatin-remodeling complex acts in noncoding RNA-mediated transcriptional silencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1007%2FS00441-014-1885-X