The emergence of proteome-wide technologies: systematic analysis of proteins comes of age. (Q38221025)

31 August 2017

title

The emergence of proteome-wide technologies: systematic analysis of proteins comes of age. (English)

1 reference

31 August 2017

Maya Schuldiner

2

0 references

author name string

Michal Breker

series ordinal

1

1 reference

31 August 2017

publication date

18 June 2014

1 reference

Nature Reviews Molecular Cell Biology

31 August 2017

published in

1 reference

31 August 2017

volume

15

1 reference

31 August 2017

issue

7

1 reference

31 August 2017

page(s)

453-464

1 reference

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

31 August 2017

cites work

1 reference

Determinants of nucleosome organization in primary human cells

31 March 2020

1 reference

Genomic expression programs in the response of yeast cells to environmental changes

31 March 2020

1 reference

Functional discovery via a compendium of expression profiles

31 March 2020

1 reference

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

31 March 2020

1 reference

Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast

31 March 2020

1 reference

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

31 March 2020

1 reference

Global analysis of the yeast osmotic stress response by quantitative proteomics

31 March 2020

1 reference

Global analysis of protein localization in budding yeast

31 March 2020

1 reference

Precision mapping of an in vivo N-glycoproteome reveals rigid topological and sequence constraints.

31 March 2020

1 reference

Status of large-scale analysis of post-translational modifications by mass spectrometry

31 March 2020

1 reference

Proteomic and phosphoproteomic comparison of human ES and iPS cells

31 March 2020

1 reference

Construction of human activity-based phosphorylation networks.

31 March 2020

1 reference

Alterations in mouse brain lipidome after disruption of CST gene: a lipidomics study

31 March 2020

1 reference

Towards lipidomics of low-abundant species for exploring tumor heterogeneity guided by high-resolution mass spectrometry imaging

31 March 2020

1 reference

Lipidomics in the analysis of malignancy

31 March 2020

1 reference

High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection

31 March 2020

1 reference

Single-cell metabolomics: analytical and biological perspectives

31 March 2020

1 reference

Profiling metabolites and peptides in single cells

31 March 2020

1 reference

Exploration of the function and organization of the yeast early secretory pathway through an epistatic miniarray profile

31 March 2020

1 reference

The chemical genomic portrait of yeast: uncovering a phenotype for all genes

31 March 2020

1 reference

An in vivo map of the yeast protein interactome

31 March 2020

1 reference

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses

31 March 2020

1 reference

Remodeling of yeast genome expression in response to environmental changes

31 March 2020

1 reference

Dissecting DNA damage response pathways by analysing protein localization and abundance changes during DNA replication stress

31 March 2020

1 reference

A novel single-cell screening platform reveals proteome plasticity during yeast stress responses

31 March 2020

1 reference

A chemostat array enables the spatio-temporal analysis of the yeast proteome

31 March 2020

1 reference

Global analysis of condition-specific subcellular protein distribution and abundance

31 March 2020

1 reference

A dynamic model of proteome changes reveals new roles for transcript alteration in yeast

31 March 2020

1 reference

Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae

31 March 2020

1 reference

Primate transcript and protein expression levels evolve under compensatory selection pressures

31 March 2020

1 reference

Comparative functional analysis of the Caenorhabditis elegans and Drosophila melanogaster proteomes

31 March 2020

1 reference

Protein abundances are more conserved than mRNA abundances across diverse taxa

31 March 2020

1 reference

Evolution. Protein expression under pressure

31 March 2020

1 reference

Yeast Expression Proteomics by High-Resolution Mass Spectrometry

31 March 2020

1 reference

Global analysis of protein expression in yeast

31 March 2020

1 reference

Towards a knowledge-based Human Protein Atlas

31 March 2020

1 reference

31 March 2020

The human protein atlas

1 reference

RNA- and antibody-based profiling of the human proteome with focus on chromosome 19.

31 March 2020

1 reference

Immunoproteomics using polyclonal antibodies and stable isotope-labeled affinity-purified recombinant proteins

31 March 2020

1 reference

The coming age of complete, accurate, and ubiquitous proteomes

31 March 2020

1 reference

Next-generation proteomics: towards an integrative view of proteome dynamics.

31 March 2020

1 reference

Mass spectrometry-based proteomics and network biology

31 March 2020

1 reference

Mass spectrometry supported determination of protein complex structure

31 March 2020

1 reference

Direct proteomic quantification of the secretome of activated immune cells.

31 March 2020

1 reference

Mass spectrometry-based proteomics for systems biology

31 March 2020

1 reference

A complete mass-spectrometric map of the yeast proteome applied to quantitative trait analysis

31 March 2020

1 reference

Quantification of mRNA and protein and integration with protein turnover in a bacterium

31 March 2020

1 reference

The quantitative proteome of a human cell line.

31 March 2020

1 reference

Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse

31 March 2020

1 reference

Quantitative and qualitative proteome characteristics extracted from in-depth integrated genomics and proteomics analysis.

31 March 2020

1 reference

Deep proteome and transcriptome mapping of a human cancer cell line

31 March 2020

1 reference

Absolute quantification of microbial proteomes at different states by directed mass spectrometry

31 March 2020

1 reference

System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap

31 March 2020

1 reference

A tissue-specific atlas of mouse protein phosphorylation and expression

31 March 2020

1 reference

Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma.

31 March 2020

1 reference

The one hour yeast proteome

31 March 2020

1 reference

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

31 March 2020

1 reference

HiRIEF LC-MS enables deep proteome coverage and unbiased proteogenomics.

31 March 2020

1 reference

Single-cell imaging mass spectrometry

31 March 2020

1 reference

Mass spectrometry-based metabolomics of single yeast cells

31 March 2020

1 reference

The importance of being persistent: heterogeneity of bacterial populations under antibiotic stress.

31 March 2020

1 reference

Cellular decision making and biological noise: from microbes to mammals

31 March 2020

1 reference

Progress toward single cell metabolomics

31 March 2020

1 reference

An introduction to mass cytometry: fundamentals and applications

31 March 2020

1 reference

Single-cell mass cytometry of differential immune and drug responses across a human hematopoietic continuum

31 March 2020

1 reference

Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators

31 March 2020

1 reference

Noise in protein expression scales with natural protein abundance

31 March 2020

1 reference

Unsupervised clustering of subcellular protein expression patterns in high-throughput microscopy images reveals protein complexes and functional relationships between proteins

31 March 2020

1 reference

Getting the whole picture: combining throughput with content in microscopy

31 March 2020

1 reference

Generation of a fluorescently labeled endogenous protein library in living human cells

31 March 2020

1 reference

Dynamic Proteomics: a database for dynamics and localizations of endogenous fluorescently-tagged proteins in living human cells

31 March 2020

1 reference

Dynamic proteomics in individual human cells uncovers widespread cell-cycle dependence of nuclear proteins

31 March 2020

1 reference

Protein dynamics in drug combinations: a linear superposition of individual-drug responses

31 March 2020

1 reference

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins

31 March 2020

1 reference

Interaction network containing conserved and essential protein complexes in Escherichia coli

31 March 2020

1 reference

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

31 March 2020

1 reference

Next generation microfluidic platforms for high-throughput protein biochemistry

31 March 2020

1 reference

What is the total number of protein molecules per cell volume? A call to rethink some published values

31 March 2020

1 reference

Adaptation to stress in yeast: to translate or not?

31 March 2020

1 reference

Translational control of localized mRNAs: restricting protein synthesis in space and time

31 March 2020

1 reference

Regulation of translation initiation in eukaryotes: mechanisms and biological targets

31 March 2020

1 reference

Translation regulation gets its 'omics' moment

31 March 2020

1 reference

High-resolution view of the yeast meiotic program revealed by ribosome profiling

31 March 2020

1 reference

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

31 March 2020

1 reference

Decoding human cytomegalovirus

31 March 2020

1 reference

The translational landscape of the mammalian cell cycle

31 March 2020

1 reference

Determinants of translation efficiency and accuracy

31 March 2020

1 reference

Diversity of degradation signals in the ubiquitin-proteasome system

31 March 2020

1 reference

Quantification of protein half-lives in the budding yeast proteome

31 March 2020

1 reference

Proteome half-life dynamics in living human cells

31 March 2020

1 reference

Using bleach-chase to measure protein half-lives in living cells.

31 March 2020

1 reference

Tandem fluorescent protein timers for in vivo analysis of protein dynamics.

31 March 2020

1 reference

Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging

31 March 2020

1 reference

Proteome dynamics: revisiting turnover with a global perspective

31 March 2020

1 reference

Protein turnover: measurement of proteome dynamics by whole animal metabolic labelling with stable isotope labelled amino acids

31 March 2020

1 reference

Turnover of the human proteome: determination of protein intracellular stability by dynamic SILAC.

31 March 2020

1 reference

Dopaminergic modulation of the hippocampal neuropil proteome identified by bioorthogonal noncanonical amino acid tagging (BONCAT)

31 March 2020

1 reference

Global analysis of cellular protein translation by pulsed SILAC

31 March 2020

1 reference

Quantitative, time-resolved proteomic analysis by combining bioorthogonal noncanonical amino acid tagging and pulsed stable isotope labeling by amino acids in cell culture

31 March 2020

1 reference

SILAC-based proteomic quantification of chemoattractant-induced cytoskeleton dynamics on a second to minute timescale

31 March 2020

1 reference

Multitagging proteomic strategy to estimate protein turnover rates in dynamic systems

31 March 2020

1 reference

QuaNCAT: quantitating proteome dynamics in primary cells.

31 March 2020

1 reference

Profiling of ubiquitin-like modifications reveals features of mitotic control.

31 March 2020

1 reference

Global analysis of protein palmitoylation in yeast

31 March 2020

1 reference

Palmitoylated proteins: purification and identification

31 March 2020

1 reference

Towards systematic discovery of signaling networks in budding yeast filamentous growth stress response using interventional phosphorylation data

31 March 2020

1 reference

Quantitative phosphoproteomics reveals the role of protein arginine phosphorylation in the bacterial stress response

31 March 2020

1 reference

Quantitative phosphoproteomics reveal mTORC1 activates de novo pyrimidine synthesis

31 March 2020

1 reference

System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation

31 March 2020

1 reference

Investigating the role of FGF-2 in stem cell maintenance by global phosphoproteomics profiling.

31 March 2020

1 reference

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

31 March 2020

1 reference

Systematic and quantitative assessment of the ubiquitin-modified proteome

31 March 2020

1 reference

Large-scale detection of ubiquitination substrates using cell extracts and protein microarrays

31 March 2020

1 reference

Formation and dissociation of proteasome storage granules are regulated by cytosolic pH.

31 March 2020

1 reference

Systematic analysis of protein pools, isoforms, and modifications affecting turnover and subcellular localization

31 March 2020

1 reference

A quantitative spatial proteomics analysis of proteome turnover in human cells

31 March 2020

1 reference

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

31 March 2020

1 reference

Monitoring protein-protein interactions between the mammalian integral membrane transporters and PDZ-interacting partners using a modified split-ubiquitin membrane yeast two-hybrid system

31 March 2020

1 reference

Biochemical approaches for discovering protein-protein interactions.

31 March 2020

1 reference

MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays

31 March 2020

1 reference

Comparative assessment of large-scale data sets of protein-protein interactions

31 March 2020

1 reference

Protein-protein interactions more conserved within species than across species

31 March 2020

1 reference

The binary protein-protein interaction landscape of Escherichia coli

31 March 2020

1 reference

Plant protein interactomes

31 March 2020

1 reference

Protein interaction mapping in C. elegans using proteins involved in vulval development

31 March 2020

1 reference

A protein interaction map of Drosophila melanogaster

31 March 2020

1 reference

The proteomics and interactomics of human erythrocytes

31 March 2020

1 reference

Towards a proteome-scale map of the human protein–protein interaction network

31 March 2020

1 reference

A census of human soluble protein complexes

31 March 2020

1 reference

Combinatorial marking of cells and organelles with reconstituted fluorescent proteins

31 March 2020

1 reference

In vivo quantification of protein–protein interactions in Saccharomyces cerevisiae using bimolecular fluorescence complementation assay

31 March 2020

1 reference

Analyzing protein-protein interactions in the post-interactomic era. Are we ready for the endgame?

31 March 2020

1 reference

Protein-protein interaction detection: methods and analysis

31 March 2020

1 reference

Protein-protein interactions: switch from classical methods to proteomics and bioinformatics-based approaches

31 March 2020

1 reference

Exploring mitochondrial system properties of neurodegenerative diseases through interactome mapping

31 March 2020

1 reference

The intraviral protein interaction network of hepatitis C virus

31 March 2020

1 reference

Discovering the Hippo pathway protein-protein interactome.

31 March 2020

1 reference

Analysis of the robustness of network-based disease-gene prioritization methods reveals redundancy in the human interactome and functional diversity of disease-genes

31 March 2020

1 reference

Interactome mapping suggests new mechanistic details underlying Alzheimer's disease

31 March 2020

1 reference

Quantitative, high-resolution proteomics for data-driven systems biology

31 March 2020

1 reference

Proteogenomic database construction driven from large scale RNA-seq data

31 March 2020

1 reference

NetGestalt: integrating multidimensional omics data over biological networks

31 March 2020

1 reference

Genomic convergence and network analysis approach to identify candidate genes in Alzheimer's disease

31 March 2020

1 reference

The Human Proteome Organization Chromosome 6 Consortium: integrating chromosome-centric and biology/disease driven strategies

31 March 2020

1 reference

Personal omics profiling reveals dynamic molecular and medical phenotypes

31 March 2020

1 reference

Life in the balance - a mechanistic view of the crosstalk between autophagy and apoptosis

31 March 2020

1 reference

Decision making at a subcellular level determines the outcome of bacteriophage infection

31 March 2020

1 reference

Universal sample preparation method for proteome analysis

31 March 2020

1 reference

Integration of miRNA and protein profiling reveals coordinated neuroadaptations in the alcohol-dependent mouse brain

31 March 2020

1 reference

LoQAtE--Localization and Quantitation ATlas of the yeast proteomE. A new tool for multiparametric dissection of single-protein behavior in response to biological perturbations in yeast

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24938631

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRM3821

1 reference

Dimensions Publication ID

31 August 2017

1046122328

0 references

1 reference