The future of ancient DNA: Technical advances and conceptual shifts (Q38270085)

1 September 2017

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title

The future of ancient DNA: Technical advances and conceptual shifts (English)

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1 September 2017

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1

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1 September 2017

Gloria González-Fortes

Gloria G Fortes

6

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Camilla Speller

Camilla F Speller

4

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Matthew Collins

Matthew J Collins

9

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Helen Goodchild

3

Helen Goodchild

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1 September 2017

Axel Barlow

5

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author name string

Johanna L A Paijmans

2

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1 September 2017

Jessica A Thomas

7

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1 September 2017

Arne Ludwig

8

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1 September 2017

language of work or name

English

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publication date

21 November 2014

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1 September 2017

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1 September 2017

37

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1 September 2017

3

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1 September 2017

284-293

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DNA sequences from the quagga, an extinct member of the horse family

1 September 2017

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Molecular cloning of Ancient Egyptian mummy DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

A rapid loss of stripes: the evolutionary history of the extinct quagga

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Genetic analyses from ancient DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Assessing ancient DNA studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Rates of evolution in ancient DNA from Adélie penguins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Mitogenomic analyses from ancient DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Resurrecting ancient animal genomes: the extinct moa and more

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Absence of Yersinia pestis-specific DNA in human teeth from five European excavations of putative plague victims

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

No proof that typhoid caused the Plague of Athens (a reply to Papagrigorakis et al.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Target-enrichment strategies for next-generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Targeted retrieval and analysis of five Neandertal mtDNA genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Multiplexed DNA sequence capture of mitochondrial genomes using PCR products

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Pulling out the 1%: whole-genome capture for the targeted enrichment of ancient DNA sequencing libraries

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Ancient whole genome enrichment using baits built from modern DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Novel high-resolution characterization of ancient DNA reveals C > U-type base modification events as the sole cause of post mortem miscoding lesions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Patterns of damage in genomic DNA sequences from a Neandertal

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

True single-molecule DNA sequencing of a pleistocene horse bone

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

mapDamage: testing for damage patterns in ancient DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

A complete ancient RNA genome: identification, reconstruction and evolutionary history of archaeological Barley Stripe Mosaic Virus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Selective enrichment of damaged DNA molecules for ancient genome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Amino acid racemization and the preservation of ancient DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Is amino acid racemization a useful tool for screening for ancient DNA in bone?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

The half-life of DNA in bone: measuring decay kinetics in 158 dated fossils

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Analysis of ancient DNA from fossil corallines (Corallinales, Rhodophyta)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Very high resolution interpolated climate surfaces for global land areas

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Modelled atmospheric temperatures and global sea levels over the past million years

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Comparison and optimization of ancient DNA extraction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

A mitochondrial genome sequence of a hominin from Sima de los Huesos

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

A 400,000-year-old mitochondrial genome questions phylogenetic relationships amongst archaic hominins: using the latest advances in ancient genomics, the mitochondrial genome sequence of a 400,000-year-old hominin has been deciphered

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Whole-genome shotgun sequencing of mitochondria from ancient hair shafts

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Ancient human genome sequence of an extinct Palaeo-Eskimo

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Genome flux and stasis in a five millennium transect of European prehistory

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Genomic sequencing of Pleistocene cave bears

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Analysis of one million base pairs of Neanderthal DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Preparation of next-generation sequencing libraries from damaged DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Optimization of 454 sequencing library preparation from small amounts of DNA permits sequence determination of both DNA strands

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Library construction for ancient genomics: single strand or double strand?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

A high-coverage genome sequence from an archaic Denisovan individual

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

The potential and challenges of nanopore sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Real-time DNA sequencing from single polymerase molecules

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Origins and genetic legacy of Neolithic farmers and hunter-gatherers in Europe

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Morphological and genetic evidence for early Holocene cattle management in northeastern China.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Targeted investigation of the Neandertal genome by array-based sequence capture

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Second-pandemic strain of Vibrio cholerae from the Philadelphia cholera outbreak of 1849.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Quantitative PCR as a predictor of aligned ancient DNA read counts following targeted enrichment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Patterns of coding variation in the complete exomes of three Neandertals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Exome-wide DNA capture and next generation sequencing in domestic and wild species

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Phenotypes from ancient DNA: approaches, insights and prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

The GenoChip: a new tool for genetic anthropology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Highly effective SNP-based association mapping and management of recessive defects in livestock

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Genomics of natural bird populations: a gene-based set of reference markers evenly spread across the avian genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Population genetic analysis of ascertained SNP data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Ascertainment bias in studies of human genome-wide polymorphism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Improving ancient DNA read mapping against modern reference genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads--a baiting and iterative mapping approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

FPSAC: fast phylogenetic scaffolding of ancient contigs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Ancient DNA chronology within sediment deposits: are paleobiological reconstructions possible and is DNA leaching a factor?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Kraken: ultrafast metagenomic sequence classification using exact alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Investigating population history using temporal genetic differentiation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Inference of population splits and mixtures from genome-wide allele frequency data

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Operational Criteria for Delimiting Species

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Species concepts and species delimitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Denisova admixture and the first modern human dispersals into Southeast Asia and Oceania

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

A genetic atlas of human admixture history

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Sex-biased dispersal of great white sharks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Genome sequencing reveals fine scale diversification and reticulation history during speciation in Sus

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Modelling the recent common ancestry of all living humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Toward a new history and geography of human genes informed by ancient DNA

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Deep sequencing of RNA from ancient maize kernels

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Germination, genetics, and growth of an ancient date seed.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

luxS in bacteria isolated from 25- to 40-million-year-old amber

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Pathogens and host immunity in the ancient human oral cavity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Insights from genomic comparisons of genetically monomorphic bacterial pathogens

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

False positives complicate ancient pathogen identifications using high-throughput shotgun sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

A new era in palaeomicrobiology: prospects for ancient dental calculus as a long-term record of the human oral microbiome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Insights from characterizing extinct human gut microbiomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Metagenomic analysis reveals presence of Treponema denticola in a tissue biopsy of the Iceman

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Coat color variation at the beginning of horse domestication

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Establishing the validity of domestication genes using DNA from ancient chickens

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Current perspectives and the future of domestication studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Convergent adaptation of human lactase persistence in Africa and Europe

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

The origins of lactase persistence in Europe

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Genomic methylation patterns in archaeological barley show de-methylation as a time-dependent diagenetic process

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Reconstructing the DNA Methylation Maps of the Neandertal and the Denisovan

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Reply to Santiago-Rodriguezet al.: WasluxSreally isolated from 25- to 40-million-year-old bacteria?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

Polymerase chain reaction reveals cloning artefacts

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FBIES.201400160

21 January 2018

Identifiers

DOI

10.1002/BIES.201400160

1 reference

1 September 2017

1 reference