Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution? (Q38325729)

2 September 2017

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title

Ten years of transcriptomics in wild populations: what have we learned about their ecology and evolution? (English)

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2 September 2017

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Christina L. Richards

series ordinal

3

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2 September 2017

Mariano Alvarez

1

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2 September 2017

Aaron W Schrey

series ordinal

2

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2 September 2017

publication date

21 January 2015

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2 September 2017

number of pages

16

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based on heuristic

inferred from page(s)

published in

Molecular Ecology

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2 September 2017

volume

24

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2 September 2017

issue

4

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2 September 2017

page(s)

710-725

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maintained by WikiProject

2 September 2017

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Robust control of the seasonal expression of the Arabidopsis FLC gene in a fluctuating environment

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Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis

21 January 2018

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Microarray data analysis: from disarray to consolidation and consensus

21 January 2018

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Basic local alignment search tool

21 January 2018

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A road map for molecular ecology

21 January 2018

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Genomic reaction norms: using integrative biology to understand molecular mechanisms of phenotypic plasticity.

21 January 2018

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Natural variation in the molecular stress network correlates with a behavioural syndrome

21 January 2018

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Analysis of variance of microarray data

21 January 2018

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Transcriptome analysis of the desert locust central nervous system: production and annotation of a Schistocerca gregaria EST database

21 January 2018

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A gene expression map of the Arabidopsis root

21 January 2018

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Genetic dissection of transcriptional regulation in budding yeast

21 January 2018

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Comparative environmental genomics in non-model species: using heterologous hybridization to DNA-based microarrays

21 January 2018

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Genome-wide analysis of alternative reproductive phenotypes in honeybee workers.

21 January 2018

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The transcriptomic responses of the eastern oyster, Crassostrea virginica, to environmental conditions

21 January 2018

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Transcriptome divergence between the hexaploid salt-marsh sister species Spartina maritima and Spartina alterniflora (Poaceae).

21 January 2018

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The ecoresponsive genome of Daphnia pulex

21 January 2018

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Linking genotypes to phenotypes and fitness: how mechanistic biology can inform molecular ecology.

21 January 2018

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Pervasive sex-linked effects on transcription regulation as revealed by expression quantitative trait loci mapping in lake whitefish species pairs (Coregonus sp., Salmonidae)

21 January 2018

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Adaptation of Saccharomyces cerevisiae to saline stress through laboratory evolution

21 January 2018

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Proteomics in evolutionary ecology: linking the genotype with the phenotype

21 January 2018

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Widespread dynamic DNA methylation in response to biotic stress

21 January 2018

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Applications of next generation sequencing in molecular ecology of non-model organisms

21 January 2018

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Adaptation in the age of ecological genomics: insights from parallelism and convergence

21 January 2018

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Intra- and interspecific variation in primate gene expression patterns

21 January 2018

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Gene coexpression networks reveal key drivers of phenotypic divergence in lake whitefish

21 January 2018

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The effects of genetic variation on gene expression dynamics during development

21 January 2018

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

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Reconstructing the origin of Helianthus deserticola: survival and selection on the desert floor

21 January 2018

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Shaping development through mechanical strain: the transcriptional basis of diet-induced phenotypic plasticity in a cichlid fish

21 January 2018

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Efficient genome editing in zebrafish using a CRISPR-Cas system

21 January 2018

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Transcriptome remodeling associated with chronological aging in the dinoflagellate, Karenia brevis.

21 January 2018

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Microarray challenges in ecology

21 January 2018

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On the utility of pooling biological samples in microarray experiments

21 January 2018

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21 January 2018

Ecological epigenetics

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Mass flowering of the tropical tree Shorea beccariana was preceded by expression changes in flowering and drought-responsive genes.

21 January 2018

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Gene expression in the brain and kidney of rainbow trout in response to handling stress

21 January 2018

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A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data

21 January 2018

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Temperature treatments during larval development reveal extensive heritable and plastic variation in gene expression and life history traits

21 January 2018

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Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling.

21 January 2018

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Microarray analysis reveals differential gene expression in hybrid sunflower species

21 January 2018

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Ecological annotation of genes and genomes through ecological genomics.

21 January 2018

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voom: Precision weights unlock linear model analysis tools for RNA-seq read counts

21 January 2018

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Gene expression profiling: opening the black box of plant ecosystem responses to global change

21 January 2018

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Microarrays, deep sequencing and the true measure of the transcriptome

21 January 2018

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Local adaptation at the transcriptome level in brown trout: evidence from early life history temperature genomic reaction norms

21 January 2018

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Deciphering and prediction of transcriptome dynamics under fluctuating field conditions.

21 January 2018

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Plant phenotypic plasticity in a changing climate.

21 January 2018

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Genomic divergence during speciation: causes and consequences

21 January 2018

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PolyCat: a resource for genome categorization of sequencing reads from allopolyploid organisms

21 January 2018

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Mechanisms of reef coral resistance to future climate change

21 January 2018

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The role of gene expression in ecological speciation

21 January 2018

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What is needed for next-generation ecological and evolutionary genomics?

21 January 2018

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Effects of pooling RNA from samples treated with different compounds for determining class specific biomarkers and processes in toxicogenomics

21 January 2018

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Transcriptome-wide signature of hybrid breakdown associated with intrinsic reproductive isolation in lake whitefish species pairs (Coregonus spp. Salmonidae).

21 January 2018

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Genome-wide patterns of Arabidopsis gene expression in nature

21 January 2018

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Genomewide identification of genes under directional selection: gene transcription Q(ST) scan in diverging Atlantic salmon subpopulations

21 January 2018

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Phenotypic Differentiation between Three Ancient Hybrid Taxa and Their Parental Species

21 January 2018

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Regulatory gene networks that shape the development of adaptive phenotypic plasticity in a cichlid fish.

21 January 2018

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Inferring evolutionary histories of pathway regulation from transcriptional profiling data

21 January 2018

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Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology

21 January 2018

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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

21 January 2018

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Ecological genomics: understanding gene and genome function in the natural environment

21 January 2018

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Challenges for identifying functionally important genetic variation: the promise of combining complementary research strategies.

21 January 2018

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Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

21 January 2018

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Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments

21 January 2018

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Transcriptomic response of red grouse to gastro-intestinal nematode parasites and testosterone: implications for population dynamics

21 January 2018

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Natural variation in Arabidopsis: from molecular genetics to ecological genomics

21 January 2018

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Functional genomics of life history variation in a butterfly metapopulation.

21 January 2018

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Comparative genomics in ecological physiology: toward a more nuanced understanding of acclimation and adaptation

21 January 2018

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Neutral and adaptive variation in gene expression

21 January 2018

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Variation within and among species in gene expression: raw material for evolution

21 January 2018

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Genomic mechanisms of evolved physiological plasticity in killifish distributed along an environmental salinity gradient

21 January 2018

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Genomic and physiological footprint of the Deepwater Horizon oil spill on resident marsh fishes.

21 January 2018

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Common functional targets of adaptive micro- and macro-evolutionary divergence in killifish

21 January 2018

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The phenomics and expression quantitative trait locus mapping of brain transcriptomes regulating adaptive divergence in lake whitefish species pairs (Coregonus sp.).

21 January 2018

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Signatures of selection in natural populations adapted to chronic pollution

21 January 2018

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SNP identification, verification, and utility for population genetics in a non-model genus

21 January 2018

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Variable gene expression in eukaryotes: a network perspective

21 January 2018

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Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial

21 January 2018

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Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow

21 January 2018

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Assessing gene significance from cDNA microarray expression data via mixed models

21 January 2018

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Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks

21 January 2018

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Contemporary fisherian life-history evolution in small salmonid populations

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/MEC.13055

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2 September 2017

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