Gene coexpression networks reveal key drivers of phenotypic divergence in lake whitefish (Q48115184)

8 February 2018

title

Gene coexpression networks reveal key drivers of phenotypic divergence in lake whitefish (English)

1 reference

8 February 2018

4

Louis Bernatchez

1 reference

8 February 2018

Marie Filteau

1

1 reference

8 February 2018

Scott A Pavey

series ordinal

2

1 reference

8 February 2018

Jérôme St-Cyr

series ordinal

3

1 reference

8 February 2018

publication date

21 March 2013

1 reference

8 February 2018

Molecular Biology and Evolution

published in

1 reference

8 February 2018

volume

30

1 reference

8 February 2018

issue

6

1 reference

8 February 2018

page(s)

1384-1396

1 reference

8 February 2018

FKBP12, the 12-kDa FK506-binding protein, is a physiologic regulator of the cell cycle

cites work

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Comparing statistical methods for constructing large scale gene networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Network biology: understanding the cell's functional organization

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

On the origin of species: insights from the ecological genomics of lake whitefish

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

The gene balance hypothesis: implications for gene regulation, quantitative traits and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

The evolution of gene expression levels in mammalian organs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

What do we need to know about speciation?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Pervasive sex-linked effects on transcription regulation as revealed by expression quantitative trait loci mapping in lake whitefish species pairs (Coregonus sp., Salmonidae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Oxidative phosphorylation gene transcription in whitefish species pairs reveals patterns of parallel and nonparallel physiological divergence.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Parallelism in the oxygen transport system of the lake whitefish: the role of physiological divergence in ecological speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

The genomics of speciation-with-gene-flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Weighted gene coexpression network analysis strategies applied to mouse weight

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

The human KROX-26/ZNF22 gene is expressed at sites of tooth formation and maps to the locus for permanent tooth agenesis (He-Zhao deficiency)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Genomewide linkage scan for combined obesity phenotypes using principal component analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Systems biology of ovine intestinal parasite resistance: disease gene modules and biomarkers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

A neutral model of transcriptome evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Neural crest patterning and the evolution of the jaw

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Mechanism of osteogenic induction by FK506 via BMP/Smad pathways

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Functional annotation of novel lineage-specific genes using co-expression and promoter analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Genome clashes in hybrids: insights from gene expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

A systems genetic analysis of high density lipoprotein metabolism and network preservation across mouse models

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

WGCNA: an R package for weighted correlation network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Is my network module preserved and reproducible?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Two developmental modules establish 3D beak-shape variation in Darwin's finches

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Strategies for aggregating gene expression data: the collapseRows R function

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

A systems level analysis of transcriptional changes in Alzheimer's disease and normal aging

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Assessing the biological significance of gene expression signatures and co-expression modules by studying their network properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Divergence in gene regulation at young life history stages of whitefish (Coregonus sp.) and the emergence of genomic isolation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Conservation and evolution of gene coexpression networks in human and chimpanzee brains

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Adaptive evolution: evaluating empirical support for theoretical predictions

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Roles for Bmp4 and CaM1 in shaping the jaw: evo-devo and beyond

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

What is needed for next-generation ecological and evolutionary genomics?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

The role of gene expression in ecological speciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Recent ecological divergence despite migration in sockeye salmon (Oncorhynchus nerka)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka)

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

A systems genetics approach implicates USF1, FADS3, and other causal candidate genes for familial combined hyperlipidemia

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Conservation, development, and function of a cement gland-like structure in the fish Astyanax mexicanus

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Emerging principles of regulatory evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Transcriptome-wide signature of hybrid breakdown associated with intrinsic reproductive isolation in lake whitefish species pairs (Coregonus spp. Salmonidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Gene expression divergence and hybrid misexpression between lake whitefish species pairs (Coregonus spp. Salmonidae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

The genetic architecture of ecological speciation and the association with signatures of selection in natural lake whitefish (Coregonus sp. Salmonidae) species pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Functional genomic analyses identify pathways dysregulated by progranulin deficiency, implicating Wnt signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

The transcriptomics of life-history trade-offs in whitefish species pairs (Coregonus sp.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

A gene-coexpression network for global discovery of conserved genetic modules

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Fish and chips: various methodologies demonstrate utility of a 16,006-gene salmonid microarray

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Impaired locomotor learning and altered cerebellar synaptic plasticity in pep-19/PCP4-null mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

The phenomics and expression quantitative trait locus mapping of brain transcriptomes regulating adaptive divergence in lake whitefish species pairs (Coregonus sp.).

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Correcting away the hidden heritability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

A systems level, functional genomics analysis of chronic epilepsy

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Speciation genetics: current status and evolving approaches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

Stitching together multiple data dimensions reveals interacting metabolomic and transcriptomic networks that modulate cell regulation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FMOLBEV%2FMST053

21 January 2018

Identifiers

DOI

10.1093/MOLBEV/MST053

1 reference

8 February 2018

1 reference

8 February 2018