Folding of the lysine riboswitch: importance of peripheral elements for transcriptional regulation (Q38338607)

2 September 2017

Folding of the lysine riboswitch: importance of peripheral elements for transcriptional regulation (English)

1 reference

2 September 2017

Simon Blouin

1

1 reference

2 September 2017

Raja Chinnappan

series ordinal

2

1 reference

2 September 2017

Daniel A Lafontaine

series ordinal

3

1 reference

2 September 2017

language of work or name

English

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publication date

17 December 2010

1 reference

2 September 2017

Nucleic Acids Research

1 reference

2 September 2017

39

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2 September 2017

8

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2 September 2017

3373-3387

1 reference

Creative Commons Attribution-NonCommercial 2.5 Generic

2 September 2017

start time

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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The structural and functional diversity of metabolite-binding riboswitches

6 September 2017

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Structural insights into amino acid binding and gene control by a lysine riboswitch

6 September 2017

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Crystal structure of the lysine riboswitch regulatory mRNA element

6 September 2017

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Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot

6 September 2017

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Direct observation of hierarchical folding in single riboswitch aptamers

6 September 2017

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The distributions, mechanisms, and structures of metabolite-binding riboswitches

6 September 2017

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Abundance and functional diversity of riboswitches in microbial communities

6 September 2017

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Ribozymes, riboswitches and beyond: regulation of gene expression without proteins

6 September 2017

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Identification of 22 candidate structured RNAs in bacteria using the CMfinder comparative genomics pipeline

6 September 2017

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A computational pipeline for high- throughput discovery of cis-regulatory noncoding RNA in prokaryotes

6 September 2017

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A loop loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control

6 September 2017

1 reference

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Riboswitches: small-molecule recognition by gene regulatory RNAs

6 September 2017

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Boltzmann probability of RNA structural neighbors and riboswitch detection

6 September 2017

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Structures of RNA switches: insight into molecular recognition and tertiary structure

6 September 2017

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Core requirements of the adenine riboswitch aptamer for ligand binding

6 September 2017

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Identification of a large noncoding RNA in extremophilic eubacteria

6 September 2017

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Folding of the adenine riboswitch

6 September 2017

1 reference

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Riboswitches: fold and function.

6 September 2017

1 reference

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Tertiary contacts distant from the active site prime a ribozyme for catalysis

6 September 2017

1 reference

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Structure of the S-adenosylmethionine riboswitch regulatory mRNA element

6 September 2017

1 reference

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Molecular basis for temperature sensing by an RNA thermometer

6 September 2017

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Riboswitches as versatile gene control elements

6 September 2017

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The structure-function dilemma of the hammerhead ribozyme

6 September 2017

1 reference

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RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

6 September 2017

1 reference

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SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

6 September 2017

1 reference

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New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control

6 September 2017

1 reference

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Regulation of gene expression by effectors that bind to RNA.

6 September 2017

1 reference

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Control of gene expression by a natural metabolite-responsive ribozyme

6 September 2017

1 reference

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Riboswitches: the oldest mechanism for the regulation of gene expression?

6 September 2017

1 reference

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Regulation of lysine biosynthesis and transport genes in bacteria: yet another RNA riboswitch?

6 September 2017

1 reference

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An mRNA structure in bacteria that controls gene expression by binding lysine

6 September 2017

1 reference

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Peripheral regions of natural hammerhead ribozymes greatly increase their self-cleavage activity

6 September 2017

1 reference

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The L box regulon: Lysine sensing by leader RNAs of bacterial lysine biosynthesis genes

6 September 2017

1 reference

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Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity

6 September 2017

1 reference

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The global structure of the VS ribozyme

6 September 2017

1 reference

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Energetics and cooperativity of tertiary hydrogen bonds in RNA structure

6 September 2017

1 reference

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Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

6 September 2017

1 reference

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T7 RNA polymerase produces 5' end heterogeneity during in vitro transcription from certain templates

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

Tertiary structure formation in the hairpin ribozyme monitored by fluorescence resonance energy transfer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

Three-dimensional structure of a hammerhead ribozyme

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

Regulation of dihydrodipicolinate synthase and aspartate kinase in Bacillus subtilis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

Fine-structure mapping of cis-acting control sites in the lysC operon of Bacillus subtilis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

Antibacterial lysine analogs that target lysine riboswitches.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

An RNA sensor for intracellular Mg(2+).

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

The kinetics of ligand binding by an adenine-sensing riboswitch

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

Roles of Mg2+ in TPP-dependent riboswitch

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

Folding of the natural hammerhead ribozyme is enhanced by interaction of auxiliary elements.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

Functional group requirements in the probable active site of the VS ribozyme

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3082890

Zwischenmolekulare Energiewanderung und Fluoreszenz

31 August 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1247

Fluorescence energy transfer shows that the four-way DNA junction is a right-handed cross of antiparallel molecules

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FNAR%2FGKQ1247

Fluorescence resonance energy transfer analysis of the structure of the four-way DNA junction

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21169337

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The leader sequence of the Escherichia coli lysC gene is involved in the regulation of LysC synthesis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21169337

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Folding of branched RNA species

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21169337

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKQ1247

1 reference

2 September 2017

1 reference

2 September 2017

PubMed publication ID

21169337

1 reference