Omega: an overlap-graph de novo assembler for metagenomics. (Q38417052)

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20 March 2020

title

Omega: an overlap-graph de novo assembler for metagenomics (English)

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20 March 2020

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2

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20 March 2020

Chongle Pan

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20 March 2020

5

Alex Copeland

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20 March 2020

author name string

Bahlul Haider

1

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20 March 2020

Brian Bushnell

3

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20 March 2020

Juanjuan Chai

4

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20 March 2020

language of work or name

English

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publication date

19 June 2014

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20 March 2020

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20 March 2020

volume

30

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20 March 2020

issue

19

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20 March 2020

page(s)

2717-2722

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ALLPATHS: de novo assembly of whole-genome shotgun microreads

20 March 2020

cites work

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

Bambus 2: scaffolding metagenomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

Fast gapped-read alignment with Bowtie 2

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

De novo assembly of human genomes with massively parallel short read sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

A whole-genome assembly of Drosophila

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

The fragment assembly string graph

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

IDBA – A Practical Iterative de Bruijn Graph De Novo Assembler

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

MetaSim: a sequencing simulator for genomics and metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

Efficient de novo assembly of large genomes using compressed data structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

ABySS: a parallel assembler for short read sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

MetAMOS: a modular and open source metagenomic assembly and analysis pipeline

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

An Efficient Implementation of a Scaling Minimum-Cost Flow Algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FBIOINFORMATICS%2FBTU395

10.1093/BIOINFORMATICS/BTU395

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947750%20AND%20SRC:MED&resulttype=core&format=json

journals/bioinformatics/HaiderABCCP14

20 March 2020

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24947750%20AND%20SRC:MED&resulttype=core&format=json