A functional perspective on phenotypic heterogeneity in microorganisms (Q38543016)

4 September 2017

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title

A functional perspective on phenotypic heterogeneity in microorganisms (English)

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4 September 2017

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phenotypic heterogeneity

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Martin Ackermann

1

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PubMed ID

26145732

4 September 2017

language of work or name

English

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publication date

6 July 2015

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Nature Reviews Microbiology

4 September 2017

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4 September 2017

13

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4 September 2017

497-508

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4 September 2017

8

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https://scigraph.springernature.com/pub.10.1038/nrmicro3491

4 September 2017

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Stochastic mechanisms in gene expression

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ENZYME INDUCTION AS AN ALL-OR-NONE PHENOMENON

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Nature, nurture, or chance: stochastic gene expression and its consequences

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Regulation of noise in gene expression

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Noise in gene expression: origins, consequences, and control

31 March 2020

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Stochasticity in gene expression: from theories to phenotypes

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Microbial cell individuality and the underlying sources of heterogeneity

31 March 2020

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Cellular decision making and biological noise: from microbes to mammals

31 March 2020

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Cellular heterogeneity: do differences make a difference?

31 March 2020

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Functional roles of pulsing in genetic circuits

31 March 2020

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Phenotypic consequences of promoter-mediated transcriptional noise

31 March 2020

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Tunability and noise dependence in differentiation dynamics

31 March 2020

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Non-genetic heterogeneity from stochastic partitioning at cell division

31 March 2020

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Playing Dr Jekyll and Mr Hyde: combined mechanisms of phase variation in bacteria

31 March 2020

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Bacterial genome instability

31 March 2020

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A simple screen to identify promoters conferring high levels of phenotypic noise

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Noise in eukaryotic gene expression

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Phenotypic variation in bacteria: the role of feedback regulation

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Temporal and spatial oscillations in bacteria

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Polarity and differential inheritance--universal attributes of life?

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Conditional and replicative senescence in Escherichia coli

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Bet hedging in yeast by heterogeneous, age-correlated expression of a stress protectant

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

A super-assembly of Whi3 encodes memory of deceptive encounters by single cells during yeast courtship.

31 March 2020

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Pole age affects cell size and the timing of cell division in Methylobacterium extorquens AM1.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Dynamic persistence of antibiotic-stressed mycobacteria

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Macromotives and microbehaviors: the social dimension of bacterial phenotypic variability.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Population context determines cell-to-cell variability in endocytosis and virus infection

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Quorum sensing: cell-to-cell communication in bacteria

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Bacterial landlines: contact-dependent signaling in bacterial populations

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Varying virulence: epigenetic control of expression noise and disease processes

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Origins of regulated cell-to-cell variability

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Individual histories and selection in heterogeneous populations

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Memory and modularity in cell-fate decision making

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Bacterial persistence as a phenotypic switch

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Bistable expression of virulence genes in salmonella leads to the formation of an antibiotic-tolerant subpopulation

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Self-destructive cooperation mediated by phenotypic noise.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Diversity in times of adversity: probabilistic strategies in microbial survival games

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Stochastic gene expression in fluctuating environments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Stochastic switching as a survival strategy in fluctuating environments

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Phenotypic diversity, population growth, and information in fluctuating environments.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Strategies for cellular decision-making

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Adaptability of non-genetic diversity in bacterial chemotaxis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Adaptive response of a gene network to environmental changes by fitness-induced attractor selection

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Hedging one's evolutionary bets, revisited

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Phenotypic bistability in Escherichia coli's central carbon metabolism

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Regulation of phenotypic variability by a threshold-based mechanism underlies bacterial persistence

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Broadly heterogeneous activation of the master regulator for sporulation in Bacillus subtilis.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Noise in gene expression determines cell fate in Bacillus subtilis

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Regulation of phenotypic heterogeneity permits Salmonella evasion of the host caspase-1 inflammatory response

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Phenotypic heterogeneity is a selected trait in natural yeast populations subject to environmental stress

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Bet-hedging during bacterial diauxic shift

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Lost in Transition: Start-Up of Glycolysis Yields Subpopulations of Nongrowing Cells

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Different levels of catabolite repression optimize growth in stable and variable environments

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Experimental evolution of bet hedging.

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Microbial individuality in the natural environment

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Transient heterogeneity in extracellular protease production by Bacillus subtilis

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Single-copy green fluorescent protein gene fusions allow accurate measurement of Salmonella gene expression in vitro and during infection of mammalian cells

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota

31 March 2020

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https://api.crossref.org/works/10.1038%2FNRMICRO3491

Heterocyst formation in cyanobacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Measuring carbon and N2 fixation in field populations of colonial and free-living unicellular cyanobacteria using nanometer-scale secondary ion mass spectrometry(1).

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Metabolic specialization and the assembly of microbial communities

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Bacteriophage control of Shiga toxin 1 production and release by Escherichia coli.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Clostridium difficile toxins: mechanism of action and role in disease

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

A novel mechanism of programmed cell death in bacteria by toxin-antitoxin systems corrupts peptidoglycan synthesis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

The cost of virulence: retarded growth of Salmonella Typhimurium cells expressing type III secretion system 1

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Going local: technologies for exploring bacterial microenvironments

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Evolutionary games and spatial chaos

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Social strife in the microbial world.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Stabilization of cooperative virulence by the expression of an avirulent phenotype.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

The evolution of social behavior in microorganisms

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Social evolution theory for microorganisms.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Cellular cooperation: insights from microbes

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

The genetical evolution of social behaviour. I

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Physiological heterogeneity in biofilms

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Bistability and biofilm formation in Bacillus subtilis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Counting the uncountable: statistical approaches to estimating microbial diversity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Marine microbes see a sea of gradients

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Ecosystem response of pasture soil communities to fumigation-induced microbial diversity reductions: an examination of the biodiversity-ecosystem function relationship

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Heterogeneity in expression of the Escherichia coli colicin K activity gene cka is controlled by the SOS system and stochastic factors.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

The private life of environmental bacteria: pollutant biodegradation at the single cell level

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Cell-to-cell stochastic variation in gene expression is a complex genetic trait.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Natural sequence variants of yeast environmental sensors confer cell-to-cell expression variability

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Single-cell phenomics reveals intra-species variation of phenotypic noise in yeast.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Noise in protein expression scales with natural protein abundance

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

A genome-wide analysis of promoter-mediated phenotypic noise in Escherichia coli

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Selection to minimise noise in living systems and its implications for the evolution of gene expression

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Impact of gene expression noise on organismal fitness and the efficacy of natural selection

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Engineering stability in gene networks by autoregulation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Conflict between noise and plasticity in yeast

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Non-genetic individuality: chance in the single cell

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Using movies to analyse gene circuit dynamics in single cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Noise propagation in gene networks

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Prokaryotic transcriptomics: a new view on regulation, physiology and pathogenicity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Single cell metabolomics.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Simultaneous fluorescence in situ hybridization of mRNA and rRNA in environmental bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

In situ visualization of newly synthesized proteins in environmental microbes using amino acid tagging and click chemistry.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Single-cell ecophysiology of microbes as revealed by Raman microspectroscopy or secondary ion mass spectrometry imaging

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Detecting metabolic activities in single cells, with emphasis on nanoSIMS.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Methane-Consuming Archaea Revealed by Directly Coupled Isotopic and Phylogenetic Analysis

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

A single-cell view on the ecophysiology of anaerobic phototrophic bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Phenotypic heterogeneity in metabolic traits among single cells of a rare bacterial species in its natural environment quantified with a combination of flow cell sorting and NanoSIMS.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Cultivating the uncultured

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Linking environmental heterogeneity and reproductive success at single-cell resolution.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Emergent cooperation in microbial metabolism

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Syntrophic exchange in synthetic microbial communities

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Synthetic Escherichia coli consortia engineered for syntrophy demonstrate enhanced biomass productivity

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Model selection for microbial nutrient uptake using a cost-benefit approach.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communities

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Quantifying the effects of the division of labor in metabolic pathways

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Analysis of fluorescent reporters indicates heterogeneity in glucose uptake and utilization in clonal bacterial populations.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Resolution of Conflicting Signals at the Single-Cell Level in the Regulation of Cyanobacterial Photosynthesis and Nitrogen Fixation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Heavy water and (15) N labelling with NanoSIMS analysis reveals growth rate-dependent metabolic heterogeneity in chemostats

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

The effect of cell growth phase on the regulatory cross-talk between flagellar and Spi1 virulence gene expression

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRMICRO3491

Chemical reactivity drives spatiotemporal organisation of bacterial metabolism

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26145732

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Bacteriocins of gram-positive bacteria

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26145732

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRMICRO3491

1 reference

PubMed ID

26145732

Dimensions Publication ID

4 September 2017

0 references

1 reference

PubMed ID

26145732