NMR study of RNA structures in the 3´-end of the Hepatitis C Virus genome. (Q38614304)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829576%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

title

Nuclear Magnetic Resonance Study of RNA Structures at the 3'-End of the Hepatitis C Virus Genome (English)

1 reference

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28 March 2020

1 reference

5

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28 March 2020

Xiao Heng

6

1 reference

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28 March 2020

author name string

Clayton Kranawetter

1

1 reference

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28 March 2020

Samantha Brady

2

1 reference

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28 March 2020

Lizhen Sun

3

1 reference

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28 March 2020

Mark Schroeder

4

1 reference

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28 March 2020

language of work or name

English

0 references

publication date

6 September 2017

1 reference

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28 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829576%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

volume

56

1 reference

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28 March 2020

page(s)

4972-4984

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28 March 2020

issue

37

1 reference

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Three-dimensional structure of the 3'X-tail of hepatitis C virus RNA in monomeric and dimeric states

28 March 2020

cites work

1 reference

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31 August 2018

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Monte Carlo Tightly Bound Ion Model: Predicting Ion-Binding Properties of RNA with Ion Correlations and Fluctuations

31 August 2018

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DHX9/RHA Binding to the PBS-Segment of the Genomic RNA during HIV-1 Assembly Bolsters Virion Infectivity

31 August 2018

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The Coding Region of the HCV Genome Contains a Network of Regulatory RNA Structures

31 August 2018

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The conserved 3'X terminal domain of hepatitis C virus genomic RNA forms a two-stem structure that promotes viral RNA dimerization.

31 August 2018

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31 August 2018

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Inhibition of HCV translation by disrupting the structure and interactions of the viral CRE and 3' X-tail

31 August 2018

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A magnesium-induced RNA conformational switch at the internal ribosome entry site of hepatitis C virus genome visualized by atomic force microscopy

31 August 2018

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31 August 2018

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End-to-end crosstalk within the hepatitis C virus genome mediates the conformational switch of the 3'X-tail region

31 August 2018

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Hepatitis C virus 3'UTR regulates viral translation through direct interactions with the host translation machinery

31 August 2018

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Direct evidence for RNA-RNA interactions at the 3' end of the Hepatitis C virus genome using surface plasmon resonance

31 August 2018

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EWSR1 binds the hepatitis C virus cis-acting replication element and is required for efficient viral replication

31 August 2018

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Hepatitis C virus RNA: molecular switches mediated by long-range RNA-RNA interactions?

31 August 2018

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Tombusvirus Y-shaped translational enhancer forms a complex with eIF4F and can be functionally replaced by heterologous translational enhancers

31 August 2018

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Database proton NMR chemical shifts for RNA signal assignment and validation

31 August 2018

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The folding of the hepatitis C virus internal ribosome entry site depends on the 3'-end of the viral genome

31 August 2018

1 reference

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A twist in the tail: SHAPE mapping of long-range interactions and structural rearrangements of RNA elements involved in HCV replication.

31 August 2018

1 reference

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The 3'-terminal hexamer sequence of classical swine fever virus RNA plays a role in negatively regulating the IRES-mediated translation

31 August 2018

1 reference

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Crystal structure of the HCV IRES central domain reveals strategy for start-codon positioning

31 August 2018

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NMR detection of structures in the HIV-1 5'-leader RNA that regulate genome packaging

31 August 2018

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Cellular magnesium homeostasis

31 August 2018

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The functional RNA domain 5BSL3.2 within the NS5B coding sequence influences hepatitis C virus IRES-mediated translation.

31 August 2018

1 reference

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The HCV IRES pseudoknot positions the initiation codon on the 40S ribosomal subunit

31 August 2018

1 reference

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Hepatitis C virus genomic RNA dimerization is mediated via a kissing complex intermediate

31 August 2018

1 reference

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Interplay of RNA elements in the dengue virus 5' and 3' ends required for viral RNA replication

31 August 2018

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Influence of the hepatitis C virus 3'-untranslated region on IRES-dependent and cap-dependent translation initiation.

31 August 2018

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A long-range RNA-RNA interaction between the 5' and 3' ends of the HCV genome

31 August 2018

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31 August 2018

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31 August 2018

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31 August 2018

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The 3' cap-independent translation element of Barley yellow dwarf virus binds eIF4F via the eIF4G subunit to initiate translation

31 August 2018

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3' RNA Elements in Hepatitis C Virus Replication: Kissing Partners and Long Poly(U)

31 August 2018

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Replication of hepatitis C virus

31 August 2018

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Structural and mechanistic insights into hepatitis C viral translation initiation

31 August 2018

1 reference

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Conformational organization of the 3' untranslated region in the tomato bushy stunt virus genome

31 August 2018

1 reference

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The Hepatitis C Virus RNA 3'-Untranslated Region Strongly Enhances Translation Directed by the Internal Ribosome Entry Site

31 August 2018

1 reference

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The 3' end of the foot-and-mouth disease virus genome establishes two distinct long-range RNA-RNA interactions with the 5' end region

31 August 2018

1 reference

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Oscillating kissing stem-loop interactions mediate 5' scanning-dependent translation by a viral 3'-cap-independent translation element

31 August 2018

1 reference

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Analysis of hepatitis C virus RNA dimerization and core-RNA interactions

31 August 2018

1 reference

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Analysis of a 3'-translation enhancer in a tombusvirus: a dynamic model for RNA-RNA interactions of mRNA termini

31 August 2018

1 reference

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Initiation factor-independent translation mediated by the hepatitis C virus internal ribosome entry site

31 August 2018

1 reference

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The hepatitis C virus 3'-untranslated region or a poly(A) tract promote efficient translation subsequent to the initiation phase

31 August 2018

1 reference

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Accessibility of 18S rRNA in human 40S subunits and 80S ribosomes at physiological magnesium ion concentrations--implications for the study of ribosome dynamics

31 August 2018

1 reference

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Long-Range RNA-RNA Interactions Circularize the Dengue Virus Genome

31 August 2018

1 reference

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Electrostatic correlations and fluctuations for ion binding to a finite length polyelectrolyte.

31 August 2018

1 reference

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Structural characterization of the highly conserved 98-base sequence at the 3' end of HCV RNA genome and the complementary sequence located at the 5' end of the replicative viral strand

31 August 2018

1 reference

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Kissing-loop interaction in the 3' end of the hepatitis C virus genome essential for RNA replication

31 August 2018

1 reference

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The pathway of HCV IRES-mediated translation initiation

31 August 2018

1 reference

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A cis-acting replication element in the sequence encoding the NS5B RNA-dependent RNA polymerase is required for hepatitis C virus RNA replication

31 August 2018

1 reference

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3' nontranslated RNA signals required for replication of hepatitis C virus RNA

31 August 2018

1 reference

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IRES-driven translation is stimulated separately by the FMDV 3'-NCR and poly(A) sequences

31 August 2018

1 reference

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Domains on the hepatitis C virus internal ribosome entry site for 40s subunit binding

31 August 2018

1 reference

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A -1 ribosomal frameshift element that requires base pairing across four kilobases suggests a mechanism of regulating ribosome and replicase traffic on a viral RNA

31 August 2018

1 reference

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Determinants of hepatitis C translational initiation in vitro, in cultured cells and mice

31 August 2018

1 reference

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Genetic Analysis of Sequences in the 3' Nontranslated Region of Hepatitis C Virus That Are Important for RNA Replication

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643200

Down-regulation of translation driven by hepatitis C virus internal ribosomal entry site by the 3' untranslated region of RNA.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643200

Base-pairing between untranslated regions facilitates translation of uncapped, nonpolyadenylated viral RNA.

31 August 2018

1 reference

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Hepatitis C virus-encoded enzymatic activities and conserved RNA elements in the 3' nontranslated region are essential for virus replication in vivo

31 August 2018

1 reference

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On the role of magnesium ions in RNA stability

31 August 2018

1 reference

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In vivo analysis of the 3' untranslated region of the hepatitis C virus after in vitro mutagenesis of an infectious cDNA clone

31 August 2018

1 reference

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The 3'-untranslated region of hepatitis C virus RNA enhances translation from an internal ribosomal entry site

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643200

Specific interaction of eukaryotic translation initiation factor 3 with the 5' nontranslated regions of hepatitis C virus and classical swine fever virus RNAs

31 August 2018

1 reference

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A prokaryotic-like mode of cytoplasmic eukaryotic ribosome binding to the initiation codon during internal translation initiation of hepatitis C and classical swine fever virus RNAs

31 August 2018

1 reference

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Determination of the secondary structure of and cellular protein binding to the 3'-untranslated region of the hepatitis C virus RNA genome

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643200

Secondary structure determination of the conserved 98-base sequence at the 3' terminus of hepatitis C virus genome RNA

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643200

Specific interaction of polypyrimidine tract-binding protein with the extreme 3'-terminal structure of the hepatitis C virus genome, the 3'X

31 August 2018

1 reference

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Transmission of hepatitis C by intrahepatic inoculation with transcribed RNA

31 August 2018

1 reference

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Identification of a highly conserved sequence element at the 3' terminus of hepatitis C virus genome RNA

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643200

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5643200

Context-influenced cap-independent translation of Tombusvirus mRNAs in vitro

31 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28829576

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/ACS.BIOCHEM.7B00573

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829576%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28829576%20AND%20SRC:MED&resulttype=core&format=json

28 March 2020

1 reference