NMR detection of structures in the HIV-1 5'-leader RNA that regulate genome packaging (Q35909166)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

title

NMR detection of structures in the HIV-1 5'-leader RNA that regulate genome packaging (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Sai Sachin Divakaruni

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

author name string

Kun Lu

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Xiao Heng

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Lianko Garyu

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Sarah Monti

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Siarhei Kharytonchyk

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Bilguujin Dorjsuren

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Gowry Kulandaivel

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Simonne Jones

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Atheeth Hiremath

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Courtney LaCotti

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Shawn Barton

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Daniel Tummillo

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Azra Hosic

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Kedy Edme

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Sara Albrecht

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Alice Telesnitsky

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

Michael F Summers

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

language of work or name

English

0 references

publication date

1 October 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

volume

334

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

issue

6053

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

page(s)

242-245

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

Structural determinants and mechanism of HIV-1 genome packaging

14 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

Analysis of the initiating events in HIV-1 particle assembly and genome packaging

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

Major groove width variations in RNA structures determined by NMR and impact of 13C residual chemical shift anisotropy and 1H–13C residual dipolar coupling on refinement

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

Imaging the interaction of HIV-1 genomes and Gag during assembly of individual viral particles

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

The remarkable frequency of human immunodeficiency virus type 1 genetic recombination

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

Architecture and secondary structure of an entire HIV-1 RNA genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

MS3D structural elucidation of the HIV-1 packaging signal

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

Effects of mutations in the human immunodeficiency virus type 1 Gag gene on RNA packaging and recombination

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

HIV-1 Gag-RNA interaction occurs at a perinuclear/centrosomal site; analysis by confocal microscopy and FRET.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

First snapshots of the HIV-1 RNA structure in infected cells and in virions.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

Is HIV-1 RNA dimerization a prerequisite for packaging? Yes, no, probably?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

The retroviral RNA dimer linkage: different structures may reflect different roles

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

RNA interactions in the 5' region of the HIV-1 genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

RNA structure and packaging signals in the 5' leader region of the human immunodeficiency virus type 1 genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

Human immunodeficiency virus type 1 preferentially encapsidates genomic RNAs that encode Pr55(Gag): functional linkage between translation and RNA packaging

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

Structure of SL4 RNA from the HIV-1 packaging signal

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

Two alternating structures of the HIV-1 leader RNA

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

The human immunodeficiency virus type 1 encapsidation site is a multipartite RNA element composed of functional hairpin structures

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

The human immunodeficiency virus type 1 5' packaging signal structure affects translation but does not function as an internal ribosome entry site structure

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

RNA secondary structure and binding sites for gag gene products in the 5' packaging signal of human immunodeficiency virus type 1.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

The human immunodeficiency virus type 1 packaging signal and major splice donor region have a conserved stable secondary structure

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

Nucleocapsid zinc fingers detected in retroviruses: EXAFS studies of intact viruses and the solution‐state structure of the nucleocapsid protein from HIV‐1

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3335204

Probing the HIV-1 genomic RNA trafficking pathway and dimerization by genetic recombination and single virion analyses

11 July 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

Dimerization of retroviral RNA genomes: an inseparable pair.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

A novel long distance base-pairing interaction in human immunodeficiency virus type 1 RNA occludes the Gag start codon

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

How retroviruses select their genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

Functional sites in the 5' region of human immunodeficiency virus type 1 RNA form defined structural domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

Role of the 5' TAR stem--loop and the U5-AUG duplex in dimerization of HIV-1 genomic RNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

NMR study of 100 kDa HCV IRES RNA using segmental isotope labeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

A universal method to produce in vitro transcripts with homogeneous 3' ends

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

An efficient and economic site-specific deuteration strategy for NMR studies of homologous oligonucleotide repeat sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

NMRPipe: a multidimensional spectral processing system based on UNIX pipes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

NMR View: A computer program for the visualization and analysis of NMR data

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

Functional characterization of the human immunodeficiency virus type 1 genome by genetic footprinting

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

Frequency of direct repeat deletion in a human immunodeficiency virus type 1 vector during reverse transcription in human cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

Nonrandom dimerization of murine leukemia virus genomic RNAs.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

Packaging of host mY RNAs by murine leukemia virus may occur early in Y RNA biogenesis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

Mfold web server for nucleic acid folding and hybridization prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.1210460

How accurately and precisely can RNA structure be determined by NMR?

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21998393

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1126/SCIENCE.1210460

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21998393%20AND%20SRC:MED&resulttype=core&format=json

14 February 2020

1 reference