A splicing-dependent transcriptional checkpoint associated with prespliceosome formation. (Q38787111)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24560925%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

title

A splicing-dependent transcriptional checkpoint associated with prespliceosome formation (English)

1 reference

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8 March 2020

2

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4

Jean D Beggs

1 reference

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8 March 2020

author name string

Keerthi T Chathoth

series ordinal

1

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8 March 2020

Shaun Webb

series ordinal

3

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8 March 2020

publication date

20 February 2014

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8 March 2020

1 reference

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8 March 2020

volume

53

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8 March 2020

issue

5

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8 March 2020

page(s)

779-790

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SR proteins collaborate with 7SK and promoter-associated nascent RNA to release paused polymerase

8 March 2020

cites work

1 reference

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Alternative splicing: a pivotal step between eukaryotic transcription and translation

6 September 2017

1 reference

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RNA helicases in splicing

6 September 2017

1 reference

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A U1-U2 snRNP interaction network during intron definition

6 September 2017

1 reference

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Modelling reveals kinetic advantages of co-transcriptional splicing

6 September 2017

1 reference

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Paused RNA polymerase II as a developmental checkpoint

6 September 2017

1 reference

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Promoter proximal pausing and the control of gene expression

6 September 2017

1 reference

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An investigation of a role for U2 snRNP spliceosomal components in regulating transcription

6 September 2017

1 reference

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Understanding splicing regulation through RNA splicing maps

6 September 2017

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RiboSys, a high-resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3'-end processing in Saccharomyces cerevisiae.

6 September 2017

1 reference

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A link between nuclear RNA surveillance, the human exosome and RNA polymerase II transcriptional termination

6 September 2017

1 reference

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Invariant U2 snRNA nucleotides form a stem loop to recognize the intron early in splicing.

6 September 2017

1 reference

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Progression through the RNA polymerase II CTD cycle

6 September 2017

1 reference

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Rates of in situ transcription and splicing in large human genes

6 September 2017

1 reference

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ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions

6 September 2017

1 reference

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The spliceosome: design principles of a dynamic RNP machine

6 September 2017

1 reference

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Pre-mRNA processing reaches back to transcription and ahead to translation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

The splicing factor SC35 has an active role in transcriptional elongation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Cracking the RNA polymerase II CTD code

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Rearrangement of competing U2 RNA helices within the spliceosome promotes multiple steps in splicing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Arrested yeast splicing complexes indicate stepwise snRNP recruitment during in vivo spliceosome assembly

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

The human SWI/SNF subunit Brm is a regulator of alternative splicing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Rules of engagement: co-transcriptional recruitment of pre-mRNA processing factors

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Modified nucleotides at the 5' end of human U2 snRNA are required for spliceosomal E-complex formation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Multiple links between transcription and splicing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

p54(nrb) associates with the 5' splice site within large transcription/splicing complexes.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Phosphorylation of serine 2 within the RNA polymerase II C-terminal domain couples transcription and 3' end processing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Prp5 bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

ATP requirement for Prp5p function is determined by Cus2p and the structure of U2 small nuclear RNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

A unified theory of gene expression

6 September 2017

1 reference

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Stimulatory effect of splicing factors on transcriptional elongation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

6 September 2017

1 reference

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Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Dynamic association of capping enzymes with transcribing RNA polymerase II

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

ATP can be dispensable for prespliceosome formation in yeast

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

RNA polymerase II is an essential mRNA polyadenylation factor

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

CUS2, a yeast homolog of human Tat-SF1, rescues function of misfolded U2 through an unusual RNA recognition motif

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

mRNA capping enzyme is recruited to the transcription complex by phosphorylation of the RNA polymerase II carboxy-terminal domain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

The C-terminal domain of RNA polymerase II couples mRNA processing to transcription

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Tat-SF1: cofactor for stimulation of transcriptional elongation by HIV-1 Tat

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

CUS1, a suppressor of cold-sensitive U2 snRNA mutations, is a novel yeast splicing factor homologous to human SAP 145.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Identification of Tat-SF1 cellular targets by exon array analysis reveals dual roles in transcription and splicing

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

The RNA polymerase C-terminal domain: a new role in spliceosome assembly

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

A 5' splice site enhances the recruitment of basal transcription initiation factors in vivo.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Transcribing RNA polymerase II is phosphorylated at CTD residue serine-7.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

SR proteins function in coupling RNAP II transcription to pre-mRNA splicing.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Promoter proximal splice sites enhance transcription

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Splicing-dependent RNA polymerase pausing in yeast

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

DSIF, the Paf1 complex, and Tat-SF1 have nonredundant, cooperative roles in RNA polymerase II elongation

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Motifs IV and V in the DEAH box splicing factor Prp22 are important for RNA unwinding, and helicase-defective Prp22 mutants are suppressed by Prp8.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Efficient association of U2 snRNPs with pre-mRNA requires an essential U2 RNA structural element

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

DExD/H-box Prp5 protein is in the spliceosome during most of the splicing cycle

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Competition between the ATPase Prp5 and branch region-U2 snRNA pairing modulates the fidelity of spliceosome assembly

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3988880

Four yeast spliceosomal proteins (PRP5, PRP9, PRP11, and PRP21) interact to promote U2 snRNP binding to pre-mRNA

3 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/24560925

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.MOLCEL.2014.01.017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24560925%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24560925%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24560925%20AND%20SRC:MED&resulttype=core&format=json