A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants. (Q38837556)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28408660%20AND%20SRC:MED&resulttype=core&format=json

17 March 2020

title

A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants (English)

1 reference

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17 March 2020

1 reference

1

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17 March 2020

Vered Tzin

3

1 reference

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17 March 2020

Georg Jander

4

1 reference

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17 March 2020

Daniel J. Kliebenstein

5

1 reference

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17 March 2020

Antonis Rokas

6

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17 March 2020

author name string

Alexander T Borowsky

2

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17 March 2020

publication date

13 April 2017

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17 March 2020

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17 March 2020

volume

29

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17 March 2020

issue

5

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17 March 2020

page(s)

944-959

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Genome-Wide Prediction of Metabolic Enzymes, Pathways, and Gene Clusters in Plants

17 March 2020

cites work

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CYP76C1 (Cytochrome P450)-Mediated Linalool Metabolism and the Formation of Volatile and Soluble Linalool Oxides in Arabidopsis Flowers: A Strategy for Defense against Floral Antagonists

31 August 2018

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Dynamic Maize Responses to Aphid Feeding Are Revealed by a Time Series of Transcriptomic and Metabolomic Assays

31 August 2018

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Six enzymes from mayapple that complete the biosynthetic pathway to the etoposide aglycone.

31 August 2018

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A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence

31 August 2018

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IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

31 August 2018

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antiSMASH 3.0-a comprehensive resource for the genome mining of biosynthetic gene clusters

31 August 2018

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31 August 2018

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Natural genetic variation in Arabidopsis thaliana defense metabolism genes modulates field fitness

31 August 2018

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Coselected genes determine adaptive variation in herbivore resistance throughout the native range of Arabidopsis thaliana

31 August 2018

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In planta variation of volatile biosynthesis: an alternative biosynthetic route to the formation of the pathogen-induced volatile homoterpene DMNT via triterpene degradation in Arabidopsis roots.

31 August 2018

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Guidance for RNA-seq co-expression network construction and analysis: safety in numbers

31 August 2018

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Indole is an essential herbivore-induced volatile priming signal in maize

31 August 2018

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31 August 2018

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31 August 2018

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Insights into secondary metabolism from a global analysis of prokaryotic biosynthetic gene clusters

31 August 2018

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31 August 2018

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Genomic signatures of specialized metabolism in plants

31 August 2018

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31 August 2018

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Natural variation in maize aphid resistance is associated with 2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one glucoside methyltransferase activity

31 August 2018

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Genomic clustering and co-regulation of transcriptional networks in the pathogenic fungus Fusarium graminearum

31 August 2018

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Biosynthesis of antinutritional alkaloids in solanaceous crops is mediated by clustered genes

31 August 2018

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An effective strategy for exploring unknown metabolic pathways by genome mining.

31 August 2018

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Fragmentation of an aflatoxin-like gene cluster in a forest pathogen

31 August 2018

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31 August 2018

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31 August 2018

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Co-expression and co-responses: within and beyond transcription

31 August 2018

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31 August 2018

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31 August 2018

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31 August 2018

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31 August 2018

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31 August 2018

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31 August 2018

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31 August 2018

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31 August 2018

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31 August 2018

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Glucosinolate biosynthetic genes in Brassica rapa.

31 August 2018

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31 August 2018

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31 August 2018

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31 August 2018

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Prephenate aminotransferase directs plant phenylalanine biosynthesis via arogenate.

31 August 2018

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31 August 2018

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31 August 2018

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Genomic and coexpression analyses predict multiple genes involved in triterpene saponin biosynthesis in Medicago truncatula

31 August 2018

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Biosynthesis of glucosinolates--gene discovery and beyond

31 August 2018

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Arabidopsis gene co-expression network and its functional modules.

31 August 2018

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CYP76M7 is an ent-cassadiene C11alpha-hydroxylase defining a second multifunctional diterpenoid biosynthetic gene cluster in rice

31 August 2018

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Genevestigator transcriptome meta-analysis and biomarker search using rice and barley gene expression databases

31 August 2018

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Rank of correlation coefficient as a comparable measure for biological significance of gene coexpression

31 August 2018

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Co-expression tools for plant biology: opportunities for hypothesis generation and caveats

31 August 2018

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Arabidopsis bile acid:sodium symporter family protein 5 is involved in methionine-derived glucosinolate biosynthesis

31 August 2018

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Benzoxazinoid biosynthesis, a model for evolution of secondary metabolic pathways in plants

31 August 2018

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Glucosinolate engineering identifies a gamma-glutamyl peptidase.

31 August 2018

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Disruption of adenosine-5'-phosphosulfate kinase in Arabidopsis reduces levels of sulfated secondary metabolites

31 August 2018

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Regulon organization of Arabidopsis

31 August 2018

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Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis

31 August 2018

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An extensive (co-)expression analysis tool for the cytochrome P450 superfamily in Arabidopsis thaliana

31 August 2018

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31 August 2018

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Annotating genes of known and unknown function by large-scale coexpression analysis

31 August 2018

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Elucidation of the final reactions of DIMBOA-glucoside biosynthesis in maize: characterization of Bx6 and Bx7

31 August 2018

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From waste products to ecochemicals: fifty years research of plant secondary metabolism

31 August 2018

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Identification of a biosynthetic gene cluster in rice for momilactones.

31 August 2018

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An oxidosqualene cyclase makes numerous products by diverse mechanisms: a challenge to prevailing concepts of triterpene biosynthesis

31 August 2018

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Plant natural products: back to the future or into extinction?

31 August 2018

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Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis

31 August 2018

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Conifer defence against insects: microarray gene expression profiling of Sitka spruce (Picea sitchensis) induced by mechanical wounding or feeding by spruce budworms (Choristoneura occidentalis) or white pine weevils (Pissodes strobi) reveals large-

31 August 2018

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Two sesquiterpene synthases are responsible for the complex mixture of sesquiterpenes emitted from Arabidopsis flowers

31 August 2018

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The secondary metabolism of Arabidopsis thaliana: growing like a weed

31 August 2018

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Metabolomics, genomics, proteomics, and the identification of enzymes and their substrates and products

31 August 2018

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Plant metabolic diversity: a regulatory perspective.

31 August 2018

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The evolutionary dynamics of eukaryotic gene order

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5466033

Genomic gene clustering analysis of pathways in eukaryotes

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5466033

Plants and human health in the twenty-first century.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5466033

Flavonoid biosynthesis. A colorful model for genetics, biochemistry, cell biology, and biotechnology

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5466033

Gene duplication in the diversification of secondary metabolism: tandem 2-oxoglutarate-dependent dioxygenases control glucosinolate biosynthesis in Arabidopsis

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5466033

An herbivore elicitor activates the gene for indole emission in maize

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5466033

Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5466033

Analysis of a chemical plant defense mechanism in grasses

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5466033

Comparative genomics of Brassica oleracea and Arabidopsis thaliana reveal gene loss, fragmentation, and dispersal after polyploidy

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5466033

Tight control of mycotoxin biosynthesis gene expression in Aspergillus flavus by temperature as revealed by RNA-Seq

4 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28408660

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Rapid defense responses in maize leaves induced by Spodoptera exigua caterpillar feeding.

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28408660