Molecular assessment of disease states in kidney transplant biopsy samples (Q38877380)

7 September 2017

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title

Molecular assessment of disease states in kidney transplant biopsy samples (English)

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7 September 2017

1

Philip F Halloran

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7 September 2017

Konrad S Famulski

2

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7 September 2017

Jeff Reeve

series ordinal

3

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7 September 2017

language of work or name

English

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publication date

27 June 2016

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Nature Reviews Nephrology

7 September 2017

published in

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7 September 2017

volume

12

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7 September 2017

issue

9

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7 September 2017

page(s)

534-548

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Molecular classification of cancer: class discovery and class prediction by gene expression monitoring

7 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

A multigene expression assay to predict local recurrence risk for ductal carcinoma in situ of the breast

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Prospective Validation of a 21-Gene Expression Assay in Breast Cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Banff 2013 meeting report: inclusion of c4d-negative antibody-mediated rejection and antibody-associated arterial lesions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Antibody-mediated microcirculation injury is the major cause of late kidney transplant failure

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Molecular microscope strategy to improve risk stratification in early antibody-mediated kidney allograft rejection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Banff 2011 Meeting report: new concepts in antibody-mediated rejection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Isolated endarteritis and kidney transplant survival: a multicenter collaborative study

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Reassessing the Significance of Intimal Arteritis in Kidney Transplant Biopsy Specimens

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

The Impact of Infection on Chronic Allograft Dysfunction and Allograft Survival After Solid Organ Transplantation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

International variation in histologic grading is large, and persistent feedback does not improve reproducibility.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Molecular diagnosis of T cell-mediated rejection in human kidney transplant biopsies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Nothing's perfect: the art of defining HLA-specific antibodies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Denatured class I human leukocyte antigen antibodies in sensitized kidney recipients: prevalence, relevance, and impact on organ allocation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Influence of test technique on sensitization status of patients on the kidney transplant waiting list

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

21 January 2018

In search of perfection.

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

IgG Donor-Specific Anti-Human HLA Antibody Subclasses and Kidney Allograft Antibody-Mediated Injury

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Complement-binding anti-HLA antibodies and kidney-allograft survival

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Anti-human leukocyte antigen and donor-specific antibodies detected by luminex posttransplant serve as biomarkers for chronic rejection of renal allografts

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Biomarkers for kidney transplant rejection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Kidney transplant rejection and tissue injury by gene profiling of biopsies and peripheral blood lymphocytes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Molecular classifiers for acute kidney transplant rejection in peripheral blood by whole genome gene expression profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

A Three-Gene Assay for Monitoring Immune Quiescence in Kidney Transplantation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

A peripheral blood diagnostic test for acute rejection in renal transplantation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

The kSORT assay to detect renal transplant patients at high risk for acute rejection: results of the multicenter AART study

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Urinary-cell mRNA profile and acute cellular rejection in kidney allografts

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Discovery and validation of a molecular signature for the noninvasive diagnosis of human renal allograft fibrosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Molecular heterogeneity in acute renal allograft rejection identified by DNA microarray profiling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Progressive histological damage in renal allografts is associated with expression of innate and adaptive immunity genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Fibrosis with inflammation at one year predicts transplant functional decline.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Genomic meta-analysis of growth factor and integrin pathways in chronic kidney transplant injury

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

A molecular classifier for predicting future graft loss in late kidney transplant biopsies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

The molecular phenotype of 6-week protocol biopsies from human renal allografts: reflections of prior injury but not future course.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Common errors in the implementation and interpretation of microarray studies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Disappearance of T Cell-Mediated Rejection Despite Continued Antibody-Mediated Rejection in Late Kidney Transplant Recipients.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Fool's gold: Why imperfect reference tests are undermining the evaluation of novel diagnostics: a reevaluation of 5 diagnostic tests for leptospirosis

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Evidence of reference standard related bias in studies of plain radiograph reading performance: a meta-regression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Imperfect gold standards for kidney injury biomarker evaluation

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Evaluation of diagnostic tests when there is no gold standard. A review of methods.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

A review of solutions for diagnostic accuracy studies with an imperfect or missing reference standard

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Endothelial gene expression in kidney transplants with alloantibody indicates antibody-mediated damage despite lack of C4d staining.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Molecular phenotypes of acute kidney injury in kidney transplants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Microarray diagnosis of antibody-mediated rejection in kidney transplant biopsies: an international prospective study (INTERCOM).

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

A molecular profile of focal segmental glomerulosclerosis from formalin-fixed, paraffin-embedded tissue

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Transcriptional Perturbations in Graft Rejection

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

MicroRNA profiles in allograft tissues and paired urines associate with chronic allograft dysfunction with IF/TA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

lncRNA-RNA Interactions across the Human Transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Long Noncoding RNAs in Urine Are Detectable and May Enable Early Detection of Acute T Cell-Mediated Rejection of Renal Allografts.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Revolution of nephrology research by deep sequencing: ChIP-seq and RNA-seq

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

A pathogenesis-based transcript signature in donor-specific antibody-positive kidney transplant patients with normal biopsies

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Clinical and molecular significance of microvascular inflammation in transplant kidney biopsies.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Microarray analysis of rejection in human kidney transplants using pathogenesis-based transcript sets.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

The molecular landscape of antibody-mediated kidney transplant rejection: evidence for NK involvement through CD16a Fc receptors

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Relationships among injury, fibrosis, and time in human kidney transplants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Polymerase chain reaction selects a novel disintegrin proteinase from CD40-activated germinal center dendritic cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Mannose receptor ligand-positive cells express the metalloprotease decysin in the B cell follicle

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Immune checkpoint targeting in cancer therapy: toward combination strategies with curative potential

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

SnapShot: T Cell Exhaustion.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Molecular and cellular insights into T cell exhaustion

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Tumor Regression and Allograft Rejection after Administration of Anti-PD-1

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

CR3 (CD11b, CD18): a phagocyte and NK cell membrane receptor with multiple ligand specificities and functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Identifying Subphenotypes of Antibody-Mediated Rejection in Kidney Transplants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Transplant glomerulopathy

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Pros and cons for C4d as a biomarker

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Diagnosing rejection in renal transplants: a comparison of molecular- and histopathology-based approaches

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

The early course of kidney allograft rejection: defining the time when rejection begins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Kidney transplants with progressing chronic diseases express high levels of acute kidney injury transcripts

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Transcriptome analysis reveals heterogeneity in the injury response of kidney transplants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Expression of B cell and immunoglobulin transcripts is a feature of inflammation in late allografts

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Urine podocin:nephrin mRNA ratio (PNR) as a podocyte stress biomarker

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

The two kidney to one kidney transition and transplant glomerulopathy: a podocyte perspective

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Urine podocyte mRNAs, proteinuria, and progression in human glomerular diseases

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Quantitative podocyte parameters predict human native kidney and allograft half-lives

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Homer W. Smith Award lecture. The juxtaglomerular apparatus: from anatomical peculiarity to physiological relevance

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Paracrine factors in tubuloglomerular feedback: adenosine, ATP, and nitric oxide

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Unraveling the relationship between macula densa cell volume and luminal solute concentration/osmolality

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Molecular diagnosis of antibody-mediated rejection in human kidney transplants

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Machine learning: Trends, perspectives, and prospects

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Machine learning and its applications to biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Potential impact of microarray diagnosis of T cell-mediated rejection in kidney transplants: The INTERCOM study

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Using Molecular Phenotyping to Guide Improvements in the Histologic Diagnosis of T Cell-Mediated Rejection.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Rates and determinants of progression to graft failure in kidney allograft recipients with de novo donor-specific antibody.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Evolution and clinical pathologic correlations of de novo donor-specific HLA antibody post kidney transplant.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Molecular patterns in human ulcerative colitis and correlation with response to infliximab

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Renal allograft fibrosis: biology and therapeutic targets

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Fibrosis--a common pathway to organ injury and failure

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Identifying specific causes of kidney allograft loss.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

FOXP3 expression in human kidney transplant biopsies is associated with rejection and time post transplant but not with favorable outcomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

The Banff 97 working classification of renal allograft pathology

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Assessing long-term nephron loss: is it time to kick the CAN grading system?

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Banff '05 Meeting Report: differential diagnosis of chronic allograft injury and elimination of chronic allograft nephropathy ('CAN')

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

International variation in the interpretation of renal transplant biopsies: report of the CERTPAP Project

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

De novo donor-specific antibody at the time of kidney transplant biopsy associates with microvascular pathology and late graft failure

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Antibodies against MICA antigens and kidney-transplant rejection

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Transplantation: Autoantibodies-epiphenomena or biological clues

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

The Use of Genomics and Pathway Analysis in Our Understanding and Prediction of Clinical Renal Transplant Injury

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Transcriptome changes of chronic tubulointerstitial damage in early kidney transplantation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Understanding the causes of kidney transplant failure: the dominant role of antibody-mediated rejection and nonadherence

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Molecular landscape of T cell-mediated rejection in human kidney transplants: prominence of CTLA4 and PD ligands

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Expression and regulation of complement receptors by human natural killer cells

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Accommodation: how you see it, how you don't

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Loss of solute carriers in T cell-mediated rejection in mouse and human kidneys: an active epithelial injury-repair response

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Molecular correlates of scarring in kidney transplants: the emergence of mast cell transcripts

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Penny wise, pound foolish? Coverage limits on immunosuppression after kidney transplantation

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Gene Expression in Biopsies of Acute Rejection and Interstitial Fibrosis/Tubular Atrophy Reveals Highly Shared Mechanisms That Correlate With Worse Long-Term Outcomes.

31 March 2020

1 reference

https://api.crossref.org/works/10.1038%2FNRNEPH.2016.85

Disturbed MHC regulation in the IFN-gamma knockout mouse. Evidence for three states of MHC expression with distinct roles for IFN-gamma

31 March 2020

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27345248

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Ischemic acute tubular necrosis induces an extensive local cytokine response. Evidence for induction of interferon-gamma, transforming growth factor-beta 1, granulocyte-macrophage colony-stimulating factor, interleukin-2, and interleukin-10

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27345248

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/NRNEPH.2016.85

1 reference

7 September 2017

1 reference