SIR2 modifies histone H4-K16 acetylation and affects superhelicity in the ARS region of plasmid chromatin in Saccharomyces cerevisiae. (Q39117291)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17012273%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

title

SIR2 modifies histone H4-K16 acetylation and affects superhelicity in the ARS region of plasmid chromatin in Saccharomyces cerevisiae (English)

1 reference

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20 December 2019

main subject

Saccharomyces cerevisiae

1 reference

3

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20 December 2019

author name string

Francesco Chiani

series ordinal

1

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20 December 2019

Francesca Di Felice

series ordinal

2

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20 December 2019

language of work or name

English

0 references

publication date

29 September 2006

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20 December 2019

published in

Nucleic Acids Research

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20 December 2019

volume

34

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20 December 2019

issue

19

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20 December 2019

page(s)

5426-5437

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Budding yeast silencing complexes and regulation of Sir2 activity by protein-protein interactions.

20 December 2019

cites work

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The Sir2 family of protein deacetylases

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The NAD(+)-dependent Sir2p histone deacetylase is a negative regulator of chromosomal DNA replication

9 September 2017

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9 September 2017

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9 September 2017

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Silent information regulator 2 family of NAD- dependent histone/protein deacetylases generates a unique product, 1-O-acetyl-ADP-ribose

9 September 2017

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A phylogenetically conserved NAD+-dependent protein deacetylase activity in the Sir2 protein family.

9 September 2017

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Uninterrupted MCM2-7 function required for DNA replication fork progression

9 September 2017

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The silencing protein SIR2 and its homologs are NAD-dependent protein deacetylases

9 September 2017

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Transcriptional silencing and longevity protein Sir2 is an NAD-dependent histone deacetylase

9 September 2017

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Characterization of five human cDNAs with homology to the yeast SIR2 gene: Sir2-like proteins (sirtuins) metabolize NAD and may have protein ADP-ribosyltransferase activity

9 September 2017

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Net1, a Sir2-associated nucleolar protein required for rDNA silencing and nucleolar integrity

9 September 2017

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Exit from mitosis is triggered by Tem1-dependent release of the protein phosphatase Cdc14 from nucleolar RENT complex

9 September 2017

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Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

9 September 2017

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Extrachromosomal rDNA circles--a cause of aging in yeast

9 September 2017

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The yeast silent information regulator Sir4p anchors and partitions plasmids

9 September 2017

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Transcriptional silencing of Ty1 elements in the RDN1 locus of yeast

9 September 2017

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An unusual form of transcriptional silencing in yeast ribosomal DNA

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

SIR2 and SIR4 interactions differ in core and extended telomeric heterochromatin in yeast

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

HST1, a new member of the SIR2 family of genes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Spreading of transcriptional repressor SIR3 from telomeric heterochromatin

9 September 2017

1 reference

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Efficient transcriptional silencing in Saccharomyces cerevisiae requires a heterochromatin histone acetylation pattern

9 September 2017

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Transcriptional silencing in yeast is associated with reduced nucleosome acetylation

9 September 2017

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In vivo analysis of chromatin following nystatin-mediated import of active enzymes into Saccharomyces cerevisiae.

9 September 2017

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Regulatable promoters of Saccharomyces cerevisiae: comparison of transcriptional activity and their use for heterologous expression

9 September 2017

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Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds

9 September 2017

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The SIR2 gene family, conserved from bacteria to humans, functions in silencing, cell cycle progression, and chromosome stability

9 September 2017

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Energetics of B-to-Z transition in DNA.

9 September 2017

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A Saccharomyces cerevisiae genomic plasmid bank based on a centromere-containing shuttle vector

9 September 2017

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Four genes responsible for a position effect on expression from HML and HMR in Saccharomyces cerevisiae

9 September 2017

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Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure

9 September 2017

1 reference

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Mitotic recombination in the rDNA of S. cerevisiae is suppressed by the combined action of DNA topoisomerases I and II.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Supercoiling of the DNA template during transcription

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

A new role for a yeast transcriptional silencer gene, SIR2, in regulation of recombination in ribosomal DNA.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Genetic evidence for an interaction between SIR3 and histone H4 in the repression of the silent mating loci in Saccharomyces cerevisiae

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Mutational analysis of the consensus sequence of a replication origin from yeast chromosome III.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Construction of a GAL1-regulated yeast cDNA expression library and its application to the identification of genes whose overexpression causes lethality in yeast

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Evidence for transcriptional regulation of orotidine-5'-phosphate decarboxylase in yeast by hybridization of mRNA to the yeast structural gene cloned in Escherichia coli

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Folding of the DNA double helix in chromatin-like structures from simian virus 40

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Steps in assembly of silent chromatin in yeast: Sir3-independent binding of a Sir2/Sir4 complex to silencers and role for Sir2-dependent deacetylation

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

DNA in transcriptionally silent chromatin assumes a distinct topology that is sensitive to cell cycle progression

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

DNA topoisomerase I controls the kinetics of promoter activation and DNA topology in Saccharomyces cerevisiae

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

The number of superhelical turns in native Virion SV40 DNA and Minicol DNA determined by the band counting method

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Direct evidence for SIR2 modulation of chromatin structure in yeast rDNA.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Hyperactivation of the silencing proteins, Sir2p and Sir3p, causes chromosome loss

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Histone acetylation reduces nucleosome core particle linking number change

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Mapping DNA interaction sites of chromosomal proteins using immunoprecipitation and polymerase chain reaction.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Molecular definition of the PAS1-1 mutation which affects silencing in Saccharomyces cerevisiae.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Nucleosome structural changes due to acetylation.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Localization and sequence analysis of yeast origins of DNA replication

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Sites required for position-effect regulation of mating-type information in yeast

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1636471

Acetylation and accessibility of rDNA chromatin in Saccharomyces cerevisiae in (Delta)top1 and (Delta)sir2 mutants

4 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17012273

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

DNA protein-interactions at the Saccharomyces cerevisiae 35 S rRNA promoter and in its surrounding region

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17012273

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKL678

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17012273%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17012273%20AND%20SRC:MED&resulttype=core&format=json

20 December 2019

PubMed publication ID

17012273

1 reference