Codon usage determines the mutational robustness, evolutionary capacity, and virulence of an RNA virus (Q39243651)

10 September 2017

Codon usage determines the mutational robustness, evolutionary capacity, and virulence of an RNA virus (English)

1 reference

10 September 2017

4

Raul Andino

1 reference

10 September 2017

1

Adam S Lauring

1 reference

10 September 2017

Ashley Acevedo

2

1 reference

10 September 2017

Samantha B Cooper

series ordinal

3

1 reference

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1 November 2012

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12

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5

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623-632

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describes a project that uses

10 September 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3504468/fullTextXML

inferred from PubMed Central ID database lookup

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC3504468/fullTextXML

inferred from PubMed Central ID database lookup

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Cryptic genetic variation promotes rapid evolutionary adaptation in an RNA enzyme

10 September 2017

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Exploring the fitness landscape of an RNA virus by using a universal barcode microarray

10 September 2017

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Synonymous but not the same: the causes and consequences of codon bias

10 September 2017

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10 September 2017

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The RNA virus quasispecies: fact or fiction?

10 September 2017

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A role for codon order in translation dynamics.

10 September 2017

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An evolutionarily conserved mechanism for controlling the efficiency of protein translation

10 September 2017

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Mutational robustness can facilitate adaptation

10 September 2017

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Genetic inactivation of poliovirus infectivity by increasing the frequencies of CpG and UpA dinucleotides within and across synonymous capsid region codons.

10 September 2017

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Synonymous genes explore different evolutionary landscapes.

10 September 2017

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Virus attenuation by genome-scale changes in codon pair bias

10 September 2017

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Robustness and evolvability: a paradox resolved

10 September 2017

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Selection for robustness in mutagenized RNA viruses

10 September 2017

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The fittest versus the flattest: experimental confirmation of the quasispecies effect with subviral pathogens.

10 September 2017

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Reduction of the rate of poliovirus protein synthesis through large-scale codon deoptimization causes attenuation of viral virulence by lowering specific infectivity

10 September 2017

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Bottleneck-mediated quasispecies restriction during spread of an RNA virus from inoculation site to brain

10 September 2017

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Modulation of poliovirus replicative fitness in HeLa cells by deoptimization of synonymous codon usage in the capsid region.

10 September 2017

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Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population

10 September 2017

1 reference

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Evolution of mutational robustness in an RNA virus

10 September 2017

1 reference

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Increased fidelity reduces poliovirus fitness and virulence under selective pressure in mice

10 September 2017

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Intratypic recombination among lineages of type 1 vaccine-derived poliovirus emerging during chronic infection of an immunodeficient patient

10 September 2017

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Evolution of genetic potential

10 September 2017

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Remote site control of an active site fidelity checkpoint in a viral RNA-dependent RNA polymerase

10 September 2017

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Robustness, evolvability, and neutrality

10 September 2017

1 reference

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The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus

10 September 2017

1 reference

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Perspective: Evolution and detection of genetic robustness

10 September 2017

1 reference

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Serial recombination during circulation of type 1 wild-vaccine recombinant polioviruses in China

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

Codon bias and frequency-dependent selection on the hemagglutinin epitopes of influenza A virus

10 September 2017

1 reference

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The extent of codon usage bias in human RNA viruses and its evolutionary origin

10 September 2017

1 reference

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Scoring residue conservation

10 September 2017

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Evolution of digital organisms at high mutation rates leads to survival of the flattest

10 September 2017

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RNA virus error catastrophe: direct molecular test by using ribavirin

10 September 2017

1 reference

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Evolvability of an RNA virus is determined by its mutational neighbourhood

10 September 2017

1 reference

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Identification of a cis-acting replication element within the poliovirus coding region

10 September 2017

1 reference

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Viral RNA and evolved mutational robustness

10 September 2017

1 reference

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Structural constraints on RNA virus evolution

10 September 2017

1 reference

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Smoothness within ruggedness: the role of neutrality in adaptation.

10 September 2017

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Selforganization of matter and the evolution of biological macromolecules

10 September 2017

1 reference

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Guanidine-selected mutants of poliovirus: mapping of point mutations to polypeptide 2C

10 September 2017

1 reference

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Construction and characterization of poliovirus subgenomic replicons

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

The antigenic structure of poliovirus.

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

Transgenic mice expressing a human poliovirus receptor: a new model for poliomyelitis

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

Amino acid substitution matrices from protein blocks

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

Simple quasispecies models for the survival-of-the-flattest effect: The role of space

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

Codon bias and mutability in HIV sequences.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

Nucleotide sequence heterogeneity of an RNA phage population.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

Engineering attenuated virus vaccines by controlling replication fidelity

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

Error thresholds and the constraints to RNA virus evolution

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

Poliovirus pathogenesis in a new poliovirus receptor transgenic mouse model: age-dependent paralysis and a mucosal route of infection.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

The broad-spectrum antiviral ribonucleoside ribavirin is an RNA virus mutagen

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

Influenza Escapes Immunity Along Neutral Networks

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3504468

Continuity in evolution: on the nature of transitions

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23159052

12 December 2020

inferred from PubMed ID database lookup

The RNA encompassing the internal ribosome entry site in the poliovirus 5' nontranslated region enhances the encapsidation of genomic RNA

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/23159052

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1016/J.CHOM.2012.10.008

1 reference

10 September 2017

1 reference

10 September 2017

PubMed publication ID

23159052

1 reference