Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima). (Q39288676)

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12 March 2020

title

Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice (Oryza glaberrima) (English)

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12 March 2020

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Manuel Ruiz

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12 March 2020

author name string

Benoit Nabholz

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12 March 2020

Gautier Sarah

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Hélène Adam

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12 March 2020

Sabine Nidelet

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Alain Ghesquière

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Sylvain Santoni

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Jacques David

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Sylvain Glémin

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publication date

18 April 2014

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12 March 2020

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12 March 2020

volume

23

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issue

9

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page(s)

2210-2227

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Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity

12 March 2020

cites work

1 reference

Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster

21 January 2018

1 reference

ABC as a flexible framework to estimate demography over space and time: some cons, many pros

21 January 2018

1 reference

Relaxation of selective constraint on dog mitochondrial DNA following domestication

21 January 2018

1 reference

Non-linear regression models for Approximate Bayesian Computation

21 January 2018

1 reference

Natural selection on protein-coding genes in the human genome

21 January 2018

1 reference

Genome-wide patterns of nucleotide polymorphism in domesticated rice

21 January 2018

1 reference

Breeding systems and genome evolution

21 January 2018

1 reference

Evolutionary history of pearl millet (Pennisetum glaucum [L.] R. Br.) and selection on flowering genes since its domestication

21 January 2018

1 reference

The legacy of domestication: accumulation of deleterious mutations in the dog genome

21 January 2018

1 reference

abc: an R package for approximate Bayesian computation (ABC)

21 January 2018

1 reference

Selection at linked sites in the partial selfer Caenorhabditis elegans

21 January 2018

1 reference

Genomic signatures of selection at linked sites: unifying the disparity among species

21 January 2018

1 reference

Evolution, consequences and future of plant and animal domestication

21 January 2018

1 reference

Why do more divergent sequences produce smaller nonsynonymous/synonymous rate ratios in pairwise sequence comparisons?

21 January 2018

1 reference

Mistranslation-induced protein misfolding as a dominant constraint on coding-sequence evolution.

21 January 2018

1 reference

Why highly expressed proteins evolve slowly

21 January 2018

1 reference

Natural selection in gene-dense regions shapes the genomic pattern of polymorphism in wild and domesticated rice.

21 January 2018

1 reference

BIONJ: an improved version of the NJ algorithm based on a simple model of sequence data

21 January 2018

1 reference

Reference-free population genomics from next-generation transcriptome data and the vertebrate-invertebrate gap

21 January 2018

1 reference

A comparative view of the evolution of grasses under domestication

21 January 2018

1 reference

Impact of mating systems on patterns of sequence polymorphism in flowering plants.

21 January 2018

1 reference

The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution

21 January 2018

1 reference

Elevated evolutionary rates in the laboratory strain of Saccharomyces cerevisiae

21 January 2018

1 reference

BioMart Central Portal: an open database network for the biological community

21 January 2018

1 reference

Bio++: efficient extensible libraries and tools for computational molecular evolution.

21 January 2018

1 reference

Challenges of detecting directional selection after a bottleneck: lessons from Sorghum bicolor

21 January 2018

1 reference

Hitchhiking of deleterious alleles and the cost of adaptation in partially selfing species

21 January 2018

1 reference

Recombination and hitchhiking of deleterious alleles

21 January 2018

1 reference

Grinding up wheat: a massive loss of nucleotide diversity since domestication

21 January 2018

1 reference

Why do human diversity levels vary at a megabase scale?

21 January 2018

1 reference

A map of rice genome variation reveals the origin of cultivated rice

21 January 2018

1 reference

Generating samples under a Wright-Fisher neutral model of genetic variation

21 January 2018

1 reference

Comparative population genomics of maize domestication and improvement

21 January 2018

1 reference

Detecting local adaptation using the joint sampling of polymorphism data in the parental and derived populations

21 January 2018

1 reference

The map-based sequence of the rice genome

21 January 2018

1 reference

Ensembl Genomes: extending Ensembl across the taxonomic space

21 January 2018

1 reference

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

21 January 2018

1 reference

Revisiting an old riddle: what determines genetic diversity levels within species?

21 January 2018

1 reference

Fast and accurate short read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

Parallel domestication of the Shattering1 genes in cereals

21 January 2018

1 reference

African rice (Oryza glaberrima): history and future potential

21 January 2018

1 reference

The accumulation of deleterious mutations in rice genomes: a hypothesis on the cost of domestication

21 January 2018

1 reference

Novel measures of linkage disequilibrium that correct the bias due to population structure and relatedness.

21 January 2018

1 reference

Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

1 reference

Genome-wide analysis in chicken reveals that local levels of genetic diversity are mainly governed by the rate of recombination

21 January 2018

1 reference

Why time matters: codon evolution and the temporal dynamics of dN/dS

21 January 2018

1 reference

GC-biased gene conversion and selection affect GC content in the Oryza genus (rice).

21 January 2018

1 reference

The Nearly Neutral Theory of Molecular Evolution

21 January 2018

1 reference

The TIGR Rice Genome Annotation Resource: improvements and new features

21 January 2018

1 reference

APE: Analyses of Phylogenetics and Evolution in R language

21 January 2018

1 reference

Gene density and human nucleotide polymorphism.

21 January 2018

1 reference

Quantitative prediction of molecular clock and ka/ks at short timescales

21 January 2018

1 reference

The nature of selection during plant domestication

21 January 2018

1 reference

Comparisons of dN/dS are time dependent for closely related bacterial genomes

21 January 2018

1 reference

Plant domestication, a unique opportunity to identify the genetic basis of adaptation

21 January 2018

1 reference

Understanding rice domestication and implications for cultivar improvement

21 January 2018

1 reference

The population structure of African cultivated rice oryza glaberrima (Steud.): evidence for elevated levels of linkage disequilibrium caused by admixture with O. sativa and ecological adaptation

21 January 2018

1 reference

The hitch-hiking effect of a favourable gene

21 January 2018

1 reference

The complex history of the domestication of rice

21 January 2018

1 reference

How fast was wild wheat domesticated?

21 January 2018

1 reference

Selection versus demography: a multilocus investigation of the domestication process in maize

21 January 2018

1 reference

The accessible chromatin landscape of the human genome

21 January 2018

1 reference

The population genomics of a fast evolver: high levels of diversity, functional constraint, and molecular adaptation in the tunicate Ciona intestinalis

21 January 2018

1 reference

Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs

21 January 2018

1 reference

RNA-Seq: a revolutionary tool for transcriptomics

21 January 2018

1 reference

Domestication relaxed selective constraints on the yak mitochondrial genome.

21 January 2018

1 reference

On the number of segregating sites in genetical models without recombination

21 January 2018

1 reference

Nonlinear dynamics of nonsynonymous (dN) and synonymous (dS) substitution rates affects inference of selection

21 January 2018

1 reference

The effects of artificial selection on the maize genome

21 January 2018

1 reference