Anterior-posterior differences in HoxD chromatin topology in limb development (Q39300951)

10 September 2017

Anterior-posterior differences in HoxD chromatin topology in limb development (English)

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10 September 2017

8

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10 September 2017

Ragnhild Eskeland

2

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author name string

Iain Williamson

1

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10 September 2017

Laura A Lettice

3

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10 September 2017

Alison E Hill

4

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10 September 2017

Shelagh Boyle

5

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10 September 2017

Graeme R Grimes

6

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10 September 2017

Robert E Hill

7

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10 September 2017

language of work or name

English

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publication date

1 September 2012

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10 September 2017

11

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inferred from page(s)

published in

Development

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10 September 2017

139

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17

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10 September 2017

3157-3167

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describes a project that uses

10 September 2017

limma

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22 June 2022

https://europepmc.org/article/PMC/3413162

inferred from PubMed Central ID database lookup

cites work

Psip1/Ledgf p52 binds methylated histone H3K36 and splicing factors and contributes to the regulation of alternative splicing

1 reference

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Opposing functions of the ETS factor family define Shh spatial expression in limb buds and underlie polydactyly

10 September 2017

1 reference

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A regulatory archipelago controls Hox genes transcription in digits

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Regulation of limb bud initiation and limb-type morphology

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Shox2 function couples neural, muscular and skeletal development in the proximal forelimb

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

A novel approach for the generation of genetically modified mammary epithelial cell cultures yields new insights into TGFβ signaling in the mammary gland

10 September 2017

1 reference

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Fgf-dependent Etv4/5 activity is required for posterior restriction of Sonic Hedgehog and promoting outgrowth of the vertebrate limb

10 September 2017

1 reference

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GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

10 September 2017

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Modeling Hox gene regulation in digits: reverse collinearity and the molecular origin of thumbness

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

How to make a zone of polarizing activity: insights into limb development via the abnormality preaxial polydactyly

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

The role of Hox genes during vertebrate limb development

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

beadarray: R classes and methods for Illumina bead-based data.

10 September 2017

1 reference

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Anteroposterior patterning in the limb and digit specification: contribution of mouse genetics

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Control of developmental regulators by Polycomb in human embryonic stem cells

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Polycomb complexes repress developmental regulators in murine embryonic stem cells

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Developmental regulation of the Hox genes during axial morphogenesis in the mouse

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Genetics of shoulder girdle formation: roles of Tbx15 and aristaless-like genes

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Evidence for an expansion-based temporal Shh gradient in specifying vertebrate digit identities

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

A global control region defines a chromosomal regulatory landscape containing the HoxD cluster

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Rnf2 (Ring1b) deficiency causes gastrulation arrest and cell cycle inhibition

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Shh and Gli3 are dispensable for limb skeleton formation but regulate digit number and identity

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Mice homozygous for a targeted disruption of Hoxd-3 (Hox-4.1) exhibit anterior transformations of the first and second cervical vertebrae, the atlas and the axis

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Direct derivation of conditionally immortal cell lines from an H-2Kb-tsA58 transgenic mouse

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Ring1B compacts chromatin structure and represses gene expression independent of histone ubiquitination

10 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Polycomb group proteins Ring1A/B are functionally linked to the core transcriptional regulatory circuitry to maintain ES cell identity

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Differentiation phenotypes of pancreatic islet beta- and alpha-cells are closely related with homeotic genes and a group of differentially expressed genes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Evidence that Shh cooperates with a retinoic acid inducible co-factor to establish ZPA-like activity.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Epigenetic temporal control of mouse Hox genes in vivo.

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Lack of bystander activation shows that localization exterior to chromosome territories is not sufficient to up-regulate gene expression

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

FGFR2 signaling in normal and limbless chick limb buds.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Ezh2 regulates anteroposterior axis specification and proximodistal axis elongation in the developing limb.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Enhancers: from developmental genetics to the genetics of common human disease.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

A regulatory 'landscape effect' over the HoxD cluster.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Chromosomal dynamics at the Shh locus: limb bud-specific differential regulation of competence and active transcription.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Identification of genes controlled by LMX1B in the developing mouse limb bud.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Nuclear reorganisation and chromatin decondensation are conserved, but distinct, mechanisms linked to Hox gene activation.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Nuclear re-organisation of the Hoxb complex during mouse embryonic development.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Use of within-array replicate spots for assessing differential expression in microarray experiments.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

The Polycomb-group gene eed is required for normal morphogenetic movements during gastrulation in the mouse embryo.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3413162

Sonic hedgehog and Fgf-4 act through a signaling cascade and feedback loop to integrate growth and patterning of the developing limb bud

2 December 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22872084

12 December 2020

inferred from PubMed ID database lookup

Control of Hoxd genes' collinearity during early limb development

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22872084

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1242/DEV.081174

1 reference

10 September 2017

1 reference

10 September 2017

PubMed publication ID

22872084

1 reference