Maximum Likelihood Implementation of an Isolation-with-Migration Model for Three Species (Q39530578)

12 September 2017

title

Maximum Likelihood Implementation of an Isolation-with-Migration Model for Three Species (English)

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12 September 2017

Daniel A Dalquen

1

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12 September 2017

Tianqi Zhu

series ordinal

2

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12 September 2017

Ziheng Yang

series ordinal

3

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12 September 2017

publication date

2 August 2016

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12 September 2017

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12 September 2017

volume

66

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12 September 2017

issue

3

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12 September 2017

page(s)

379-398

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Efficient computation in the IM model.

12 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

FlyBase: establishing a Gene Group resource for Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Inference from gene trees in a subdivided population

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Comparison of Bayesian and maximum-likelihood inference of population genetic parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

BLAST+: architecture and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Inferring the evolutionary histories of divergences in Hylobates and Nomascus gibbons through multilocus sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Mapping Human Genetic Ancestry

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Is a new and general theory of molecular systematics emerging?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

The genomic landscape of species divergence in Ficedula flycatchers

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Mosquito genomics. Extensive introgression in a malaria vector species complex revealed by phylogenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Bayesian inference of ancient human demography from individual genome sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Isolation with migration models for more than two populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

On computing the coalescence time density in an isolation-with-migration model with few samples.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

A second-generation assembly of the Drosophila simulans genome provides new insights into patterns of lineage-specific divergence

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

The effect of gene flow on the coalescent time in the human-chimpanzee ancestral population.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Bears in a forest of gene trees: phylogenetic inference is complicated by incomplete lineage sorting and gene flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Genomic variation in natural populations of Drosophila melanogaster

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Comparative species divergence across eight triplets of spiny lizards (Sceloporus) using genomic sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Population genomics reveal recent speciation and rapid evolutionary adaptation in polar bears

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

A general method for calculating likelihoods under the coalescent process

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Hybridization as an invasion of the genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

How reticulated are species?

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Genome-wide evidence for speciation with gene flow in Heliconius butterflies

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Recurrent introgression of mitochondrial DNA among hares (Lepus spp.) revealed by species-tree inference and coalescent simulations.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

The coalescent in two colonies with symmetric migration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

The coalescent and the genealogical process in geographically structured population.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Estimating divergence dates and substitution rates in the Drosophila phylogeny

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Genome assembly and annotation of a Drosophila simulans strain from Madagascar

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Genetic evidence for complex speciation of humans and chimpanzees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Property and efficiency of the maximum likelihood method for molecular phylogeny.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Divergence time and population size in the lineage leading to modern humans

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Next-generation hybridization and introgression

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Estimating divergence parameters with small samples from a large number of loci

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Reticulate evolutionary history and extensive introgression in mosquito species revealed by phylogenetic network analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

The distribution of the coalescence time and the number of pairwise nucleotide differences in a model of population divergence or speciation with an initial period of gene flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

An autosomal analysis gives no genetic evidence for complex speciation of humans and chimpanzees

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

A likelihood ratio test of speciation with gene flow using genomic sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

The BPP program for species tree estimation and species delimitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Bayesian species delimitation using multilocus sequence data

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Evaluation of a bayesian coalescent method of species delimitation

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Population genetics of speciation in nonmodel organisms: I. Ancestral polymorphism in mangroves.

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Speciation in the Rana chensinensis species complex and its relationship to the uplift of the Qinghai-Tibetan Plateau

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Maximum likelihood implementation of an isolation-with-migration model with three species for testing speciation with gene flow

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

Distribution of nucleotide differences between two randomly chosen cistrons in a subdivided population: The finite island model

21 January 2018

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW063

21 January 2018

Identifiers

DOI

10.1093/SYSBIO/SYW063

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12 September 2017

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