Global and local indices for characterizing biomolecular flexibility and rigidity (Q39547820)

13 September 2017

Global and local indices for characterizing biomolecular flexibility and rigidity (English)

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13 September 2017

Christopher Pfleger

1

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13 September 2017

Sebastian Radestock

series ordinal

2

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13 September 2017

Elena Schmidt

series ordinal

3

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13 September 2017

Holger Gohlke

series ordinal

4

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13 September 2017

25 September 2012

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Journal of Computational Chemistry

13 September 2017

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13 September 2017

34

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13 September 2017

3

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13 September 2017

220-233

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Dynamic personalities of proteins

13 September 2017

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The complex inter-relationships between protein flexibility and stability

21 January 2018

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The stability of proteins in extreme environments

21 January 2018

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Protein rigidity and thermophilic adaptation

21 January 2018

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A flexible approach for understanding protein stability.

21 January 2018

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Unifying mechanical and thermodynamic descriptions across the thioredoxin protein family.

21 January 2018

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Hot spots and transient pockets: predicting the determinants of small-molecule binding to a protein-protein interface

21 January 2018

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HIV-1 TAR RNA spontaneously undergoes relevant apo-to-holo conformational transitions in molecular dynamics and constrained geometrical simulations.

21 January 2018

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Flexibility analysis of biomacromolecules with application to computer-aided drug design.

21 January 2018

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Some like it cold: biocatalysis at low temperatures.

21 January 2018

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Flexibility and packing in proteins

21 January 2018

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Topological determinants of protein folding

21 January 2018

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Small-world view of the amino acids that play a key role in protein folding.

21 January 2018

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Network analysis of protein dynamics

21 January 2018

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Uncovering network systems within protein structures.

21 January 2018

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Side-chain clusters in protein structures and their role in protein folding

21 January 2018

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Protein flexibility predictions using graph theory

21 January 2018

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Protein unfolding: rigidity lost

21 January 2018

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A natural coarse graining for simulating large biomolecular motion

21 January 2018

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Change in protein flexibility upon complex formation: analysis of Ras-Raf using molecular dynamics and a molecular framework approach.

21 January 2018

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Network rigidity at finite temperature: relationships between thermodynamic stability, the nonadditivity of entropy, and cooperativity in molecular systems

21 January 2018

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Sampling protein conformations and pathways

21 January 2018

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Constrained geometric simulation of diffusive motion in proteins

21 January 2018

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Multiscale modeling of macromolecular conformational changes combining concepts from rigidity and elastic network theory.

21 January 2018

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Large-scale comparison of protein essential dynamics from molecular dynamics simulations and coarse-grained normal mode analyses

21 January 2018

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Thermostability in rubredoxin and its relationship to mechanical rigidity

21 January 2018

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Statics of the ribosomal exit tunnel: implications for cotranslational peptide folding, elongation regulation, and antibiotics binding

21 January 2018

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Thermostabilizing mutations preferentially occur at structural weak spots with a high mutation ratio

21 January 2018

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The distribution and query systems of the RCSB Protein Data Bank

21 January 2018

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Errors in protein structures

21 January 2018

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Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation

21 January 2018

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Protein flexibility using constraints from molecular dynamics simulations.

21 January 2018

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Automated design of the surface positions of protein helices

21 January 2018

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Thermostability of salt bridges versus hydrophobic interactions in proteins probed by statistical potentials.

21 January 2018

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Intermediate states in protein folding

21 January 2018

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Identification of core amino acids stabilizing rhodopsin

21 January 2018

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Cluster size diversity, percolation, and complex systems

21 January 2018

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Different subdomains are most protected from hydrogen exchange in the molten globule and native states of human alpha-lactalbumin

21 January 2018

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Hydrogen bond networks determine emergent mechanical and thermodynamic properties across a protein family

21 January 2018

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Conserved quantitative stability/flexibility relationships (QSFR) in an orthologous RNase H pair

21 January 2018

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Elucidating protein thermodynamics from the three-dimensional structure of the native state using network rigidity

21 January 2018

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Analyzing the flexibility of RNA structures by constraint counting

21 January 2018

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Constraint counting on RNA structures: linking flexibility and function

21 January 2018

1 reference

21 January 2018

Identifiers

DOI

10.1002/JCC.23122

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journals/jcc/PflegerRSG13

13 September 2017

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DBLP Dataset 2021-01-02

28 January 2021

1 reference