Deep sequencing of Porphyromonas gingivalis and comparative transcriptome analysis of a LuxS mutant (Q39564148)

13 September 2017

Deep sequencing of Porphyromonas gingivalis and comparative transcriptome analysis of a LuxS mutant (English)

1 reference

13 September 2017

0 references

Porphyromonas gingivalis

0 references

0 references

5

Richard J Lamont

1 reference

13 September 2017

Takanori Hirano

1

1 reference

13 September 2017

David A C Beck

series ordinal

2

1 reference

13 September 2017

Donald R Demuth

series ordinal

3

1 reference

13 September 2017

Murray Hackett

series ordinal

4

1 reference

13 September 2017

12 June 2012

1 reference

Frontiers in Cellular and Infection Microbiology

13 September 2017

1 reference

13 September 2017

2

1 reference

13 September 2017

79

1 reference

describes a project that uses

13 September 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/3422912

inferred from PubMed Central ID database lookup

SQL

1 reference

26 June 2022

https://europepmc.org/article/PMC/PMC3422912

inferred from PubMed Central ID database lookup

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Comprehensive transcriptome analysis of the periodontopathogenic bacterium Porphyromonas gingivalis W83.

14 September 2017

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14 September 2017

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14 September 2017

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An integrated proteomics/transcriptomics approach points to oxygen as the main electron sink for methanol metabolism in Methylotenera mobilis

14 September 2017

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Deep sequencing-based analysis of the anaerobic stimulon in Neisseria gonorrhoeae

14 September 2017

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Tetratricopeptide repeat protein-associated proteins contribute to the virulence of Porphyromonas gingivalis

14 September 2017

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Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes

14 September 2017

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Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs

14 September 2017

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14 September 2017

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14 September 2017

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A strand-specific RNA-Seq analysis of the transcriptome of the typhoid bacillus Salmonella typhi

14 September 2017

1 reference

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Localization of P. gingivalis in preterm delivery placenta

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

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14 September 2017

1 reference

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Proteomics of Porphyromonas gingivalis within a model oral microbial community

14 September 2017

1 reference

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Fast and accurate short read alignment with Burrows-Wheeler transform

14 September 2017

1 reference

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Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing

14 September 2017

1 reference

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Involvement of Shewanella oneidensis MR-1 LuxS in biofilm development and sulfur metabolism

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Functional analysis of the group A streptococcal luxS/AI-2 system in metabolism, adaptation to stress and interaction with host cells

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Periodontal disease and coronary heart disease incidence: a systematic review and meta-analysis

14 September 2017

1 reference

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Determination of the genome sequence of Porphyromonas gingivalis strain ATCC 33277 and genomic comparison with strain W83 revealed extensive genome rearrangements in P. gingivalis

14 September 2017

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

14 September 2017

1 reference

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14 September 2017

1 reference

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The prevalence and incidence of coronary heart disease is significantly increased in periodontitis: a meta-analysis

14 September 2017

1 reference

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The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions

14 September 2017

1 reference

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The RprY response regulator of Porphyromonas gingivalis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Role of oxyR in the oral anaerobe Porphyromonas gingivalis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Short fimbriae of Porphyromonas gingivalis and their role in coadhesion with Streptococcus gordonii

14 September 2017

1 reference

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Making 'sense' of metabolism: autoinducer-2, LuxS and pathogenic bacteria.

14 September 2017

1 reference

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Is autoinducer-2 a universal signal for interspecies communication: a comparative genomic and phylogenetic analysis of the synthesis and signal transduction pathways

14 September 2017

1 reference

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Coenzyme B12 riboswitches are widespread genetic control elements in prokaryotes

14 September 2017

1 reference

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Statistical Issues in cDNA Microarray Data Analysis

14 September 2017

1 reference

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S-Ribosylhomocysteinase (LuxS) Is a Mononuclear Iron Protein

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

14 September 2017

1 reference

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luxS and arcB control aerobic growth of Actinobacillus actinomycetemcomitans under iron limitation

14 September 2017

1 reference

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LuxS-based signaling in Streptococcus gordonii: autoinducer 2 controls carbohydrate metabolism and biofilm formation with Porphyromonas gingivalis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

The LuxS family of bacterial autoinducers: biosynthesis of a novel quorum-sensing signal molecule

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Signaling system in Porphyromonas gingivalis based on a LuxS protein

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

The COG database: a tool for genome-scale analysis of protein functions and evolution

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

KEGG: kyoto encyclopedia of genes and genomes

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Life below the gum line: pathogenic mechanisms of Porphyromonas gingivalis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Characterization of a Tn4351-generated hemin uptake mutant of Porphyromonas gingivalis: evidence for the coordinate regulation of virulence factors by hemin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Regulation of hemin and iron transport in Porphyromonas gingivalis.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Community signalling between Streptococcus gordonii and Porphyromonas gingivalis is controlled by the transcriptional regulator CdhR.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

A Porphyromonas gingivalis tyrosine phosphatase is a multifunctional regulator of virulence attributes

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Functional analysis of luxS in the probiotic strain Lactobacillus rhamnosus GG reveals a central metabolic role important for growth and biofilm formation

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

LuxS involvement in the regulation of genes coding for hemin and iron acquisition systems in Porphyromonas gingivalis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Functional analysis of luxS in Staphylococcus aureus reveals a role in metabolism but not quorum sensing

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Microarray analysis of quorum-sensing-regulated genes in Porphyromonas gingivalis

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Functional definition of LuxS, an autoinducer-2 (AI-2) synthase and its role in full virulence of Streptococcus suis serotype 2.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

The bcp gene in the bcp-recA-vimA-vimE-vimF operon is important in oxidative stress resistance in Porphyromonas gingivalis W83.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Income inequality and periodontal diseases in rich countries: an ecological cross-sectional study.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Expression patterns of genes induced by oxidative stress in Porphyromonas gingivalis

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Maturation of the 5' end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

The effect of oxygen on the growth and physiology of Porphyromonas gingivalis

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

LuxS-dependent quorum sensing in Porphyromonas gingivalis modulates protease and haemagglutinin activities but is not essential for virulence.

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Isolation and characterization of the rml gene homologs from Porphyromonas gingivalis

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Vitamin B12 repression of the btuB gene in Salmonella typhimurium is mediated via a translational control which requires leader and coding sequences

21 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3422912

Genetic heterogeneity of Porphyromonas (Bacteroides) gingivalis by genomic DNA fingerprinting

21 August 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22919670

12 December 2020

inferred from PubMed ID database lookup

The effect of growth rate and haemin on the virulence and proteolytic activity of Porphyromonas gingivalis W50

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22919670

12 December 2020

inferred from PubMed ID database lookup

Proteomics-based analysis of a counter-oxidative stress system in Porphyromonas gingivalis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22919670

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.3389/FCIMB.2012.00079

1 reference

13 September 2017

1 reference

13 September 2017

PubMed publication ID

22919670

1 reference