Triathlon for energy functions: who is the winner for design of protein-protein interactions? (Q39776843)

14 September 2017

Triathlon for energy functions: who is the winner for design of protein-protein interactions? (English)

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protein-protein interaction

14 September 2017

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Oz Sharabi

1

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14 September 2017

Ayelet Dekel

series ordinal

2

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14 September 2017

Julia M Shifman

series ordinal

3

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14 September 2017

language of work or name

English

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publication date

1 March 2011

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14 September 2017

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14 September 2017

79

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14 September 2017

5

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14 September 2017

1487-1498

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Computational design of affinity and specificity at protein-protein interfaces

14 September 2017

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Rational design of intercellular adhesion molecule-1 (ICAM-1) variants for antagonizing integrin lymphocyte function-associated antigen-1-dependent adhesion

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Exploring the origins of binding specificity through the computational redesign of calmodulin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Affinity enhancement of an in vivo matured therapeutic antibody using structure-based computational design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Computational design of protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Ca2+ indicators based on computationally redesigned calmodulin-peptide pairs

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

The atomic structure of protein-protein recognition sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Diversity of protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Protein-protein interactions: organization, cooperativity and mapping in a bottom-up Systems Biology approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Unraveling hot spots in binding interfaces: progress and challenges

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Origins of PDZ domain ligand specificity. Structure determination and mutagenesis of the Erbin PDZ domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Dissecting cooperative and additive binding energetics in the affinity maturation pathway of a protein-protein interface.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Determinants of binding affinity and specificity for the interaction of TEM-1 and SME-1 beta-lactamase with beta-lactamase inhibitory protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Protein binding versus protein folding: the role of hydrophilic bridges in protein associations

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Structure-based Protocol for Identifying Mutations that Enhance Protein–Protein Binding Affinities

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Harnessing phage and ribosome display for antibody optimisation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Rational design of faster associating and tighter binding protein complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Predicting the rate enhancement of protein complex formation from the electrostatic energy of interaction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Computational design of antibody-affinity improvement beyond in vivo maturation

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

De novo protein design: fully automated sequence selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Optimizing energy functions for protein-protein interface design.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Energy functions for protein design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Minimizing and learning energy functions for side-chain prediction.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Backbone-dependent rotamer library for proteins. Application to side-chain prediction

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Protein structure prediction using Rosetta

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Dramatic performance enhancements for the FASTER optimization algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

What makes Ras an efficient molecular switch: a computational, biophysical, and structural study of Ras-GDP interactions with mutants of Raf

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Computational design of calmodulin mutants with up to 900-fold increase in binding specificity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Design, expression and characterization of mutants of fasciculin optimized for interaction with its target, acetylcholinesterase

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Native protein sequences are close to optimal for their structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Synthetic antibodies from a four-amino-acid code: a dominant role for tyrosine in antigen recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

On the contribution of water-mediated interactions to protein-complex stability.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Algorithm for backrub motions in protein design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

Prediction of protein-protein interface sequence diversity using flexible backbone computational protein design

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

The dead-end elimination theorem and its use in protein side-chain positioning

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FPROT.22977

21 January 2018

Identifiers

DOI

10.1002/PROT.22977

1 reference

14 September 2017

1 reference